Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01030 ATGATGAGGCTGCAAACGTATGCTGGTCTTAGTTTGATTGCAACACTTGCTGTTATATACCATGCCTTTAACAGTAGAGGCCAGTTTTACCCATCAATGGTTTATTTGTCCACCTCTAAGATCTGTTTGGTGCTTCTTCTCAACATGGGTCTGGTCATAATGTGTGTTTTATGGCAATTAACCAAGAAGGTATTCCTTGGTTCTTTAAGAGAAGCCGAGGTTGAGAGACTTAATGAGCAATCATGGAGGGAGGTCATGGAAATCCTATTTGCCATCACTATCTTCAGGCAGGATTTTTCCGTTACATTTCTCGCTATGGTCACTGCTTTATTGTTGATCAAGGCTTTGCATTGGTTAGCTCAGAAAAGGGTGGAGTATATCGAAACTACTCCAACAGTTCCCACGCTATCTCACGTTCGGATTGTATCTTTTATGGGGTTCCTGCTTCTTCTTGATGGTCTCTTCTTGTACAGTTCGATGAAGCATTTGTTAGAGACACGGCAGGCTTCAGTTTCTATTTTCTTTGCTTTTGAGTACATGATACTGGCGACAACAACTGTATCCATATTCGTGAAATATGTCTTCTATGTCAGTGACATGCTTATGGAGGGACAATGGGAGAAGAAGCCCGTTTTTACATTTTACTTGGAACTCATTCGAGATTTGCTGCACTTGTCTATGTATCTGTGCTTCTTTCTTGTGATTTTTGTAAATTACGGCGTTCCTTTGCACTTAATAAGAGAGCTCTATGAGACATTTAGGAACTTCAAGATCCGTGTGGCCGACTACATACGTTATCGGAAGATAACTTCAAATATGAATGATCGTTTTCCAGATGCAACTCCTGAAGAGCTTAATGCAAGTGATGCTACCTGCATCATTTGCCGTGAAGAAATGACAACAGCCAAGAAATTGATATGTGGACATCTTTTCCACGTGCATTGTCTCCGGTCATGGTTGGAGCGACAACACACTTGCCCAACTTGTAGAGCTTTGGTTGTACCTCCAGAAACTGGCACAAGTGCTGCTGGAGGGCCGCAAGGTTCACAAGCTGATGCTCATGGTCATGGGAGAGGCTCTGGAACCACAGCCCAAGGTGCCAGCGATGGTGGTCCAGCAGGTGATAATGTGAGTCAGCATCAGACAAGGCTACAAGCTGCTGCTGCTGCTGCTGCAATATACGAGAAATCTTACGTATACCCTTCGGCAAATTCCTTAGTATGGTCCCCAGGATATGCAGTATATCCTCAGGTTCAAAGACCTTTGTCAGATATCCCTACTGGACAAGCAGAACAGTTTACCCCTACAGGACCTTCAAATTTCTCCTTTCCTCCAATGGGGCACTGTTTTTTCTTTCCTTCTCAGGTGCCTGGTGTGAACAGTAGGGACAGCCAAAGTTTGAGAGACAATCCAGGCATGTCAGAGCCGGAGCTTGAAGCTCAAAGGCGATTTATTCAGCATCAGATTGAGGTTCTGCAAAACGAGCTCCAACTTCTACCGAAGCCAAAAATGGAGAGGAAAGTCGAGGAAGAATGTGCATCATCATTGTCGGATAACAAAGGGAAAAATGTTGCCTCGTCTTCCTCGCTCACTAGCCACAATGGTCAAAATGCTGCTGAAGATATCTCTAGATAA 1635 0.4398 MMRLQTYAGLSLIATLAVIYHAFNSRGQFYPSMVYLSTSKICLVLLLNMGLVIMCVLWQLTKKVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPTVPTLSHVRIVSFMGFLLLLDGLFLYSSMKHLLETRQASVSIFFAFEYMILATTTVSIFVKYVFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYLCFFLVIFVNYGVPLHLIRELYETFRNFKIRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPETGTSAAGGPQGSQADAHGHGRGSGTTAQGASDGGPAGDNVSQHQTRLQAAAAAAAIYEKSYVYPSANSLVWSPGYAVYPQVQRPLSDIPTGQAEQFTPTGPSNFSFPPMGHCFFFPSQVPGVNSRDSQSLRDNPGMSEPELEAQRRFIQHQIEVLQNELQLLPKPKMERKVEEECASSLSDNKGKNVASSSSLTSHNGQNAAEDISR* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01030 544 Coils Coil 475 495 - -
Pte1g01030 544 MobiDBLite consensus disorder prediction 338 381 - -
Pte1g01030 544 MobiDBLite consensus disorder prediction 361 381 - -
Pte1g01030 544 MobiDBLite consensus disorder prediction 517 544 - -
Pte1g01030 544 PANTHER RING ZINC FINGER PROTEIN 1 522 - -
Pte1g01030 544 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Pte1g01030 544 Pfam Ring finger domain 291 330 IPR001841 -
Pte1g01030 544 MobiDBLite consensus disorder prediction 501 516 - -
Pte1g01030 544 SUPERFAMILY RING/U-box 272 336 - -
Pte1g01030 544 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 336 IPR013083 -
Pte1g01030 544 MobiDBLite consensus disorder prediction 501 544 - -
Pte1g01030 544 SMART ring_2 292 329 IPR001841 -
Pte1g01030 544 CDD RING-H2_synoviolin 289 330 - -
Pte1g01030 544 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01030 Pte-Chr1 23714797 23720602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01030 1 528 C3H Transcription Factor Family AT3G16090 65.356 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01030 K10601 - qsu:112000395 818.535