Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01007 ATGTCTTGGTTTGGGTCCGTTCAACTCTTCGCGCGCTCTACTGCATATTATACTCGTAGTTCTACTTCTCACTCACAGCAACTCTTCATTCGCAATGCCTCCGAGAATGGCAGCGAGATTCAGCTTCTTAAGAAAAGCACAACAAGAAGGAGAGGGAGAAGAAAAATCAAAAGTACTGAACAAAGTTCCAAGGCAATAACAGTATCTGTCGCACACAAACCCATTGAACCAATTATAAGCACAAGCAGTAGCAAGGAGGAAGAGAAGGATTGCAACGATGGGATGACGTCGAAGCTACAGAATACTGAGAATGCCAATGGAGATCCACTAGGTCGCAGAGACTTGGGAAAGAAAGTTGTGAAATGGATTGGTCAGGGCATGAGAGCTATGGCGTTGGATATTGCAACCGCCGAGGTGCAAGGGGAGTTCTCTGAGGTAAGGCAACGAATAGGAAAGGGGCCGAGGTTTACCTTCGTGATCCAGGCTCAGCCTTATCTTAACGCAGTTCCCATGCCGCTTGGTCTTGAAGCTAGTTGCTTGAAGGCTTGCTCGCACTATGCCACTTTGTTCGATCATTTCCAGAGGGAGCTTCAAATCGTATTGAAAGACTTGCAGGCAAAATCACTGGTTCAAAGCTGGCGCCGCTCTGATTCTTGGAAACTGCTGAAGGAGATCGGCAGTTCAGTGGAGCACAGAGCAGTGGCACGGAAAGAAAGGCATGGGAGCGGTCTGAAAGGCGTTATGGGAATGGACCTAGAGAAGGTCAAGGCTATACAGAACAGGATTGATCTTTTCACAGAGCGAATGTCAGAGCTTCTTCGGATAGAGAGGGATGCTGAACTGGAATATACTCAGGAGGAGTTGGATGCTGTTCCTAAACCGGATGAAACGTCATCGGATTCTGGGAAGCCAATTGAGTTCTTGGTTACCCATGGTCAGTCTCAGCAAGAATTATGTGACACCATCTGCAACTTAAATGCCGTCAGTACATCTACAGGACTAGGTGGAATGCATTTGGTTTTATTCAGGATTGAAGGGGGTCACAGATTACCTCCTACCACTCTTTCACCAGGGGAGATGGTTTGTGTGAGAACATGTGATAGCAGGGGTGCTGGTACAACTTCTTCCATGCAAGGTTTTGTTAATAATCTTGGGGATGATGGCTGCAGCATTACTGTTGCTTTAGCACCTCGACGTGGTGATTCAACATTCTCTAAACTTTTTGGCAAGACAGTCCGCATTGATCGCATACAAGGTCTGGCAGACACACTCACATATGAGCGCAACTGTGAAGCACTAATGATGCTTCAAAAGAATGGCTTAAGGAAGAAAAATCCTTCAATTGCTTTGGTTGCCACACTTTTTGGAGATAAGGAAGATGTTGCATGGCTCGAAACGAATCATTTGGCTGATTGGAGTGAGGAAAGTCAACATGATATTTTAGGGAATGAAGCTTTTGATAGTTCCCAGAGAAGAGCCATTGCATTCGGTTTAAATAAGAGGAGGCCTATATTGATAATCCAAGGGCCTCCTGGTACTGGGAAGACAGGTTTACTGAAGGAACTTATTGTACGCGCTGTTCAACAAGGTGAAAGGGTACTTGTCACAGCACCAACTAATGCAGCCATCGACAACATGGTTGAAAAGCTTGCGGATGTTGGTTTAAGCATTGTCCGTGTTGGCAACCCTGCACGTATATCAACAGCTGTAAGTTCAAAGTCATTGGTAGAGATTGTCAATTCTAAGCTCAAAGGTTTCCGAGCTGAGTATGAAAGGAAGAAATCAAATTTGAGGAAGGACCTGAGACATTGTCTAAAGGACGATTCTCTTGCTGCTGGTATACGACAACTTTTAAGACAATTGGATAAGTCTCTGAAAAAGGAGGAAAAGGAGGTTGTGAAGGAAGTGCTCTCAAGTGCGCAAATTGTTTTTTCCACAAACACTGGAGCAGCGGAGCCATTGATACGTAGATTGGGCACCTTTGACTTGGTAGTCATAGATGAAGCTGGACAGGCAATTGAACCTTCTTGTTGGATCCCTTTACTAAGAGGAAAGCGTTGTATTATGGCTGGTGATCAATGCCAGCTTGCTCCAGTTGTTCTATCTAGAGATGCCTTAGAAGGTGGTCTTGGGATTTCTCTGATGGAGAGAGCTGCAGCTTTGCATGAAGGAGTACTCGCGACAAGATTAACAGTTCAGTACCGTATGAATGATGCAATTGCCAGCTGGGCCTCAAAAGAGATGTATGGTGGATCACTCAAGTCGTCCGAAGCTGTCTCATCTCATCGTCTTGCGGACTCTCCTTTTGTGAGGCTCTCGTGGATAACACAATGCCCTCTGCTATTACTTGACACAAGAATGCCGCATGGAAGTCTGTCCATTGGTTGTGGAGAGCATCTAGACCCAGCAGGCACTGGCTCGTTTTATAATGAAGGAGAAGCAGATATCGTGATCCAGCATGTCTTCTCGTTAATTTACTCTGGTGTTAGCCCAAAAGCTATTGCAGTGCAATCTCCTTATGTTGCGCAAGTGCAGCTCTTAAGGGACAGGCTTGATGAACTTCCAGAAGCGGCTGGGGTTGAAATTGCAACTATTGATAGCTTCCAAGGCCGAGAGGCTGACGCAGTTATTATATCAATGGTGCGCTCCAATAATTTGGGGGCTGTTGGATTTCTGGGAGACAGCAGAAGGATCAACGTCGCTATAACAAGAGCACGCAAACATGTAGCAGTTGTTTGCGATAGCTCAACTATATGCCACAACACATTCTTGGCAAGGCTTTTACGTCATATCCGCCATTATGGCAGAGTCAAGCATGCAGAACCTGGTAGCCTTGGAGGAGAATTTGACCTGGGTATGTACCCAATGTTGCCATCAATTAATTAA 2886 0.456 MSWFGSVQLFARSTAYYTRSSTSHSQQLFIRNASENGSEIQLLKKSTTRRRGRRKIKSTEQSSKAITVSVAHKPIEPIISTSSSKEEEKDCNDGMTSKLQNTENANGDPLGRRDLGKKVVKWIGQGMRAMALDIATAEVQGEFSEVRQRIGKGPRFTFVIQAQPYLNAVPMPLGLEASCLKACSHYATLFDHFQRELQIVLKDLQAKSLVQSWRRSDSWKLLKEIGSSVEHRAVARKERHGSGLKGVMGMDLEKVKAIQNRIDLFTERMSELLRIERDAELEYTQEELDAVPKPDETSSDSGKPIEFLVTHGQSQQELCDTICNLNAVSTSTGLGGMHLVLFRIEGGHRLPPTTLSPGEMVCVRTCDSRGAGTTSSMQGFVNNLGDDGCSITVALAPRRGDSTFSKLFGKTVRIDRIQGLADTLTYERNCEALMMLQKNGLRKKNPSIALVATLFGDKEDVAWLETNHLADWSEESQHDILGNEAFDSSQRRAIAFGLNKRRPILIIQGPPGTGKTGLLKELIVRAVQQGERVLVTAPTNAAIDNMVEKLADVGLSIVRVGNPARISTAVSSKSLVEIVNSKLKGFRAEYERKKSNLRKDLRHCLKDDSLAAGIRQLLRQLDKSLKKEEKEVVKEVLSSAQIVFSTNTGAAEPLIRRLGTFDLVVIDEAGQAIEPSCWIPLLRGKRCIMAGDQCQLAPVVLSRDALEGGLGISLMERAAALHEGVLATRLTVQYRMNDAIASWASKEMYGGSLKSSEAVSSHRLADSPFVRLSWITQCPLLLLDTRMPHGSLSIGCGEHLDPAGTGSFYNEGEADIVIQHVFSLIYSGVSPKAIAVQSPYVAQVQLLRDRLDELPEAAGVEIATIDSFQGREADAVIISMVRSNNLGAVGFLGDSRRINVAITRARKHVAVVCDSSTICHNTFLARLLRHIRHYGRVKHAEPGSLGGEFDLGMYPMLPSIN* 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01007 961 SMART ultradead3 482 733 IPR014001 -
Pte1g01007 961 CDD SF1_C_Upf1 736 932 IPR047187 -
Pte1g01007 961 Pfam AAA domain 486 702 IPR041677 GO:0004386
Pte1g01007 961 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 80 943 - -
Pte1g01007 961 Gene3D - 268 718 IPR027417 -
Pte1g01007 961 Pfam AAA domain 712 915 IPR041679 -
Pte1g01007 961 Gene3D - 734 942 IPR027417 -
Pte1g01007 961 CDD DEXXQc_SMUBP2 486 735 - -
Pte1g01007 961 MobiDBLite consensus disorder prediction 81 111 - -
Pte1g01007 961 Gene3D - 288 420 - -
Pte1g01007 961 SMART AAA_5 501 716 IPR003593 GO:0016887
Pte1g01007 961 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 923 IPR027417 -
Pte1g01007 961 Coils Coil 587 607 - -
Pte1g01007 961 Coils Coil 611 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01007 Pte-Chr1 22646216 22655921 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01007 472 675 Core DNA Replication Machinery Family AT1G08840 25.728 1.09e-07 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01007 - - tcc:18599669 1375.92