Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00995 ATGGATTTAAAAAATCTTGAGAGGAGGAGATCTACAAAGGAGAAAATGATCAAGGATAGCCTGGTCGATGAACAAGATAATGACTTGGAGGAAGAGGAGGAGTTTGGTGGTGAGAACCTTGATGAAGACAAGAAGAAATCAGTAGGAGGATATGGCAGGAGAGGAGGGTCCAATTCTTGTGGAGCTTCCCCACCTTCTTGTCAAGCTGAAAGATGTGGAGCTAGTATGACTGATGCAAAAAGGTACCATCGTCGACATAAAGTCTGCGAGTTTCATTCCAAGGCATCTGTTGTTATGGTTTCAGGCCTAAGACAGAGGTTTTGCCAGCAATGTAGCAGGTTCCACGAGATAACTGAGTTTGATGAATCAAAAAGAAGCTGCCGCAGGCGGTTGGCTGGACACAATGAGCGTCGCCGCAAAAGTCCGGCCGAGACAACTGTTGGCGTCCTGTCCAATGAGATATCAAGCAACGTTCATGCTGTTGGTCAACAATCCAAGGACAGTCATTTCAGGCTAGCTGATGGAAGAGGCAGAATCCACAATAGCAACCCGGGAGCTTCCACTTACAAATCGTTCAATAGGCATAACTAA 591 0.4602 MDLKNLERRRSTKEKMIKDSLVDEQDNDLEEEEEFGGENLDEDKKKSVGGYGRRGGSNSCGASPPSCQAERCGASMTDAKRYHRRHKVCEFHSKASVVMVSGLRQRFCQQCSRFHEITEFDESKRSCRRRLAGHNERRRKSPAETTVGVLSNEISSNVHAVGQQSKDSHFRLADGRGRIHNSNPGASTYKSFNRHN* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00995 196 ProSiteProfiles Zinc finger SBP-type profile. 64 141 IPR004333 GO:0003677
Pte1g00995 196 Gene3D - 62 128 IPR036893 GO:0003677|GO:0005634
Pte1g00995 196 Pfam SBP domain 67 140 IPR004333 GO:0003677
Pte1g00995 196 MobiDBLite consensus disorder prediction 1 23 - -
Pte1g00995 196 MobiDBLite consensus disorder prediction 174 196 - -
Pte1g00995 196 MobiDBLite consensus disorder prediction 24 38 - -
Pte1g00995 196 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 46 155 IPR044817 GO:0003677
Pte1g00995 196 MobiDBLite consensus disorder prediction 1 67 - -
Pte1g00995 196 MobiDBLite consensus disorder prediction 181 196 - -
Pte1g00995 196 SUPERFAMILY SBT domain 65 145 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00995 Pte-Chr1 22318205 22319711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00995 56 172 SBP-box Gene Family AT1G53160 60.684 1.93e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte1g00995 SBP 1.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00995 - - qsa:O6P43_029124 218.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g00995 1 22318205 22319711 Pte1g00995 1 22318205 22319711 RCT