Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00990 ATGGATGATGTTAAACCTTTGCCTGCGTCACCCGGCAGTCCATATCCAGGATTTGAACAAGAGGATCCTACTGTATCCAGATTCACTGATTTCTGCAAGAAGGGACTCTTATTGGATGAGAAAAGCTTTGGTCAAGCAGTGAAGTTGTTAAAAGAAACCAAAGCTCTTTTAGCTTCAAACATATCTGCTGTTGGAAATGGGACGCCTGAGGAAGCAGAGCGGTATTGGTTTTCATTCATTTTATACTCAGTTAAAAGGTTGGCTGAGAAGAGCAACCACATGGAGCAAGAAGAAAGTTCTGATAATACACTTAACTTATGCCAAATACTGAGATTAGCAAAGCTCAACATCGTGGAATTCTTTAAAGAACTTCCTCAGTTTGTTGTTAAAGCTGGTTCTATTTTAACAAGTCTATATGGTGCAGATTGGGAAAACAAGCTTGAGGCAAAGGAGCTGCAAGCCAATTTTGTGCACTTAAGCCTTCTTAGCAAGTATTATAAACGTGTGTATGGGGAGTTCTTCCTAACAAGCGATGCTAATGATGGAAAGCAGTCGCTTGCTAATATGGCCAATGGTTTTGCATCCAAGTACCATCGTTTTGGATGGTTGCTCTTCTTGGCATTGCGTGTGCATGCATTCAGCCGTTTTAAAGATCTTGTGACTTGTACAAATGGATTAGTTTCGGTATTGGTTATCTTGATTATTCATGTTCCTGTTCCGTTTAGAAAGTTTAGTATCTATGACTCCACACGCTTTGTTAAGAAAAGCAACACAGGAGTGGACCTTCTTGCTTCCCTTTGCAACATCTACGACACTTCAGAAGAAGAACTGAAGAAAACTATGGACAAGACTAACAATTTAATCTCAAATATTTTGAATAAAAAAGCTCGTCTGGCATCTGAGTTTGAAAATGAAAACCTAGAAAATATCGACAAAGATAGCTTGATCTATTTTGAAGATCTAATGGATGAATCGTCACTCTCTTCTAGCATAGACATTTTAGAAAAGGATTATGATGAGGCAATTCATAATAAGGGAGAATTAGATGAGAGAGTTTTCATAGACGAGGACGACAGCTTACTGGGTTCTGGAAGCTTGTCTGGAGGCGCTCTGAGTATAACTGGCTTTAAGAGAAAGTATGATTCATTAGCCTCACCTACAAAGTCAGTCACATGTCAACTCTCACCTTGCCGCTCCCCTGCATCTCATGCAAATGGCATCCCTGGTAGTACAACTGCAAAGATGGCAGCTACACCTGTAAGCACAGCTATGACTACTGCAAAGTGGCTCCGAACTCTCATTTCTCCCCTTCCATCAAAACCCTCACCAGAGCTCGAAAGGTTCCTGGCAGCCTGTGACAAAGATGTTACCAGTGATGTGGTGCGTCGGGTGCAGATAATTTTACAGGCAATTTTTCCTAGCAGTCCTCTGGGAGAGCGTTGTGTCACTGGAAAGCTGCCAAATGCTAATGTAATGGACAACATTTGGGCTGAACAGCGAAGGTTAGAAGCCTTGAAGTTATATTACAGGGTCTTGGAAGCAATGTGCAGGGCTGAATCTCAAGTATTGCATGCTACCAATCTGACTTCACTATTAACCAATGAGAGGTTTCATAGATGTATGCTTGCCTGTTCAGCAGAGTTAGTTCTGGCAACGCACAAGACTGTCACCATGTTGTTTCCTGCTGTGTTGGAGCGCACTGGCATAACAGCTTTTGATCTTAGCAAGGTAATTGAAAGTTTTATTAGACATGAAGAATCTCTCCCAAGAGAACTAAGAAGACATCTGAATTCCTTGGAAGAACGACTTTTGGAGAGTATGGTATGGGAAAAGGGTTCATCGATGTATAATTCTTTGATAGTTGCTAGGCCTGCACTCTCAGCAGAGATAAATCGTCTAGGATTGCTGGGAGAACCAATGCCATCTTTGGATGCAATTGCCATGCAAATTAACTTCCCTTGTGCTGGGCTTCCCTCAGTGCCTTCAATGCAGAAGGTTGACAGTTTGCCTGGTCAGAATGGGGATCTCAGATCTCCAAAGCGATTATGCATGGAACTCAGAAATGTGTTAGTGGAACGGAATTCTTTCACCTCACCAGTCAAAGACCGTCTTCTACCTTTTAGCAACATTAAGTCAAAGGCACAGCTTCCTCCTTTGCAGTCAGCATTTGCCAGTCCAACAAGACCCAATCCTGGAGGTGGTGGAGAAACATGTGCTGAGACCGGAATCAATATATTTTTTGGCAAGATAGTGAAATTGGGAGCTGTCAGAATTAACGGTATGGTTGAAAGACTACAACTATCTCAGCAGATACGGGAGAATGTCTACCGACTTTTCCAACAAATACTAAACCAGAAGACATCTCTCTTCTTCAACCGTCATATTGACCAAATAATTCTATGTTGCTTCTATGGTGTTTCGAAGATTTCTCAATTGTCTTTGACTTTTCGGGAGATCATTTACAACTACAGGAAGCAACCACATTGCAAAACACAGGTTTTCCGCAGTGTATATGTCGATTGGTCACCATCATGCCACAGTGGGAGAAACGGACAGGATCATGTTGATATCATCACTTTCTACAACGAAACATTTGTTCCTTCAGTAAAATCTCTGCTGGTTGAGCTTGGCCAGAGTGGAACACCCAAAAAAAGTAATGTCAAACCAGAAGTCAATAATAACAAAGAGGCTCCATGTCCAGGATCACCAAAAGTGACTTCTTTTCCTAGCCTTCCCGATATGTCACCAAAGAAAGTATCTGCAACACACAATGTGTATGTGTCTCCTTTACGGTCATCAAAGATGGATGCTTTGATATCACATACTTCAAAGAGCTACTATGCTTGCGTGGGAGAGAGTACTCATGCATATCAGAGTCCTTCGAAGGATTTAACAGCAATTAACAACCGTTTGAACAGTACCCGAAAGGTCAGAGGTACACTCAACTTTGATGATGCTGACGCTGGTTTGGTTAGTGATTCTATGGTGGCCAATAGCCTCTATCTCCAAAATGGAAACTGTGCATCTTCATCAGGTGCACCAGTGAAATCTGAGCAACCTGACTCTTAA 3069 0.419 MDDVKPLPASPGSPYPGFEQEDPTVSRFTDFCKKGLLLDEKSFGQAVKLLKETKALLASNISAVGNGTPEEAERYWFSFILYSVKRLAEKSNHMEQEESSDNTLNLCQILRLAKLNIVEFFKELPQFVVKAGSILTSLYGADWENKLEAKELQANFVHLSLLSKYYKRVYGEFFLTSDANDGKQSLANMANGFASKYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSVLVILIIHVPVPFRKFSIYDSTRFVKKSNTGVDLLASLCNIYDTSEEELKKTMDKTNNLISNILNKKARLASEFENENLENIDKDSLIYFEDLMDESSLSSSIDILEKDYDEAIHNKGELDERVFIDEDDSLLGSGSLSGGALSITGFKRKYDSLASPTKSVTCQLSPCRSPASHANGIPGSTTAKMAATPVSTAMTTAKWLRTLISPLPSKPSPELERFLAACDKDVTSDVVRRVQIILQAIFPSSPLGERCVTGKLPNANVMDNIWAEQRRLEALKLYYRVLEAMCRAESQVLHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVARPALSAEINRLGLLGEPMPSLDAIAMQINFPCAGLPSVPSMQKVDSLPGQNGDLRSPKRLCMELRNVLVERNSFTSPVKDRLLPFSNIKSKAQLPPLQSAFASPTRPNPGGGGETCAETGINIFFGKIVKLGAVRINGMVERLQLSQQIRENVYRLFQQILNQKTSLFFNRHIDQIILCCFYGVSKISQLSLTFREIIYNYRKQPHCKTQVFRSVYVDWSPSCHSGRNGQDHVDIITFYNETFVPSVKSLLVELGQSGTPKKSNVKPEVNNNKEAPCPGSPKVTSFPSLPDMSPKKVSATHNVYVSPLRSSKMDALISHTSKSYYACVGESTHAYQSPSKDLTAINNRLNSTRKVRGTLNFDDADAGLVSDSMVANSLYLQNGNCASSSGAPVKSEQPDS* 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00990 1022 Coils Coil 274 294 - -
Pte1g00990 1022 FunFam Retinoblastoma-related protein 1 693 903 - -
Pte1g00990 1022 Gene3D - 421 609 - -
Pte1g00990 1022 MobiDBLite consensus disorder prediction 1 22 - -
Pte1g00990 1022 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 24 1020 IPR028309 GO:0006357|GO:0051726
Pte1g00990 1022 Coils Coil 331 351 - -
Pte1g00990 1022 SMART cyclin_7 756 874 IPR013763 -
Pte1g00990 1022 Gene3D - 705 896 - -
Pte1g00990 1022 SUPERFAMILY Cyclin-like 741 886 IPR036915 -
Pte1g00990 1022 MobiDBLite consensus disorder prediction 880 916 - -
Pte1g00990 1022 FunFam Retinoblastoma-related protein 1 421 609 - -
Pte1g00990 1022 SUPERFAMILY Cyclin-like 426 621 IPR036915 -
Pte1g00990 1022 Pfam Domain of unknown function (DUF3452) 98 236 IPR024599 -
Pte1g00990 1022 SMART DUF3452_2 87 236 IPR024599 -
Pte1g00990 1022 SMART RB_A_2 418 619 IPR002720 GO:0005634|GO:0051726
Pte1g00990 1022 Pfam Retinoblastoma-associated protein B domain 743 870 IPR002719 GO:0005634|GO:0051726
Pte1g00990 1022 Pfam Retinoblastoma-associated protein A domain 418 619 IPR002720 GO:0005634|GO:0051726
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00990 Pte-Chr1 22119339 22128342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00990 1 1023 Core Cell Cycle Gene Families AT3G12280 69.350 0.0 1392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Pte1g00990 RB_A 1.2e-64 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00990 K04681 - qsa:O6P43_029726 1601.65