LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte1g00984	ATGGCAAAAGTGGAGGCAAACATGTCCTCACAGCAAGCAGATTCCAGTTTCAATTACAACGAAGTTTCAGGTCCACATGAAAGACTAGAGAGCCTGAAGAGTCAATCTGGAAACAGATTCTGTGCTGATTGTGGATCCCCAGATCCCAAATGGGTATCATCAAGTCTTGGAGTATTTATTTGCATCAAGTGCTCTGGTGTACATAGAAGCCTTGGAGTGCATGTGTCAAAGGTTCTATCAGCAAAGCTGGATGAATGGACAGATGAAGAAATCGATACTTTGGTAAAATTTGGTGGAAAAACTTACCTAAATAAAAAGTACGAAGCTTCCATTCAAAAAGCCACAAAAAAACCAGATACAAACTCTTCCCATGAAGATCGCAGAGTTTATAAGGTGAGAAAATATCGGCAGCTTGAATTTCTGGATTATGATGATAGCATGTCTAGCTCAGTTGGTTCATCTGATGAACTGACGGCATGCCCATTCAATCCAAGCAGAAGACATGATAAGAAACAATTTGGGAAGCAGATTACTAAGCACCGTTTCGCGCTCGCACTTCGTCATGGTTTGGTTCAAAAAGATTCAGAACCTAAGGCAGCCAGAAAGAGCAAATCTTTGGCAGGCATGGTTGAATTTGTTGGACTACTTAAGGTTAATGTGGTTCGAGGCACTAACCTAGATTTTAGAGATGTCTTGAGCAGTGACCCTTATGTCATTATTAATCTAGGTCACCAGTCAACAAAGACCCGTGTCATAAAGAAGAATTTAAACCCAGTGTGGAACGAAACCCTACTATTGTCCATACCAGAAACAACTCCCCCTCTAAAAGTGTGCCGATCAGATTGCTTCATGGATTTTGCTCAGCCAATAATCCGCCGCATTACAAAATTAGATAAATTTATTGGAATATTTATGCAGTTAGTGTATGATAAAGACAAATTCAAAGTTGAAGACTTCATGGGAGAGGCTGAGATAGACATACAACCCTTATTTGCTGTAGCCAACACCGGAATTTGGAAAGTGGATGTCATGCAAGGAGAGCACCCTTGTTAG	1053	0.4074	MAKVEANMSSQQADSSFNYNEVSGPHERLESLKSQSGNRFCADCGSPDPKWVSSSLGVFICIKCSGVHRSLGVHVSKVLSAKLDEWTDEEIDTLVKFGGKTYLNKKYEASIQKATKKPDTNSSHEDRRVYKVRKYRQLEFLDYDDSMSSSVGSSDELTACPFNPSRRHDKKQFGKQITKHRFALALRHGLVQKDSEPKAARKSKSLAGMVEFVGLLKVNVVRGTNLDFRDVLSSDPYVIINLGHQSTKTRVIKKNLNPVWNETLLLSIPETTPPLKVCRSDCFMDFAQPIIRRITKLDKFIGIFMQLVYDKDKFKVEDFMGEAEIDIQPLFAVANTGIWKVDVMQGEHPC*	351

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte1g00984	350	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	26	148	IPR001164	GO:0005096
	Pte1g00984	350	Pfam	C2 domain	215	277	IPR000008	-
	Pte1g00984	350	Pfam	C2 domain	308	332	IPR000008	-
	Pte1g00984	350	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	209	331	IPR035892	-
	Pte1g00984	350	MobiDBLite	consensus disorder prediction	1	22	-	-
	Pte1g00984	350	SMART	C2_3c	215	339	IPR000008	-
	Pte1g00984	350	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	21	335	IPR044518	GO:0005096\|GO:0005543
	Pte1g00984	350	SMART	arf_gap_3	26	148	IPR001164	GO:0005096
	Pte1g00984	350	ProSiteProfiles	C2 domain profile.	193	340	IPR000008	-
	Pte1g00984	350	CDD	ArfGap	29	135	-	-
	Pte1g00984	350	SUPERFAMILY	ArfGap/RecO-like zinc finger	27	141	IPR037278	-
	Pte1g00984	350	Pfam	Putative GTPase activating protein for Arf	28	141	IPR001164	GO:0005096
	Pte1g00984	350	Gene3D	Arf GTPase activating protein	6	148	IPR038508	-
	Pte1g00984	350	Gene3D	C2 domain	201	343	IPR035892	-
	Pte1g00984	350	PRINTS	HIV Rev interacting protein signature	78	99	IPR001164	GO:0005096
	Pte1g00984	350	PRINTS	HIV Rev interacting protein signature	38	57	IPR001164	GO:0005096
	Pte1g00984	350	PRINTS	HIV Rev interacting protein signature	57	74	IPR001164	GO:0005096
	Pte1g00984	350	FunFam	stromal membrane-associated protein 1 isoform X1	10	146	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte1g00984	Pte-Chr1	21932961	21942647	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte1g00984	28	334	C2H2 Transcription Factor Family	AT4G21160	41.694	1.48e-78	242

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte1g00984	K12486		-	qsa:O6P43_029685	347.821