Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00962 ATGCAGCACATACACATACATGCTACCCCACTCACTCAGGTTTTTGAATCCAACGAAGATCATCGGGGGAATGACAAAGAGAACAACAATTTGAAGCAGAAAAGGCCTGTCGGTAACAAAGAAGCGGTTCGAAAGTATAGGGAGAAGAAGAAGGCCCAAATAGCTCTTTTGGAGGAGGAAGTTAAGAAATTGCGGTTGTTGAATCAACAATTACTTAGGAAATTACAGGCGCATCAATATCTGGAAGCTGAGGTTTTGAGGTTGAGAAGCATTTTGATTGAGCTCAGAGGAAAGATTGACACTGAGTTGGGTACTTCCCCATTTCAAAATATGTGTAACTCCACCCCCAATTTTCAAAGAGGATAA 366 0.4153 MQHIHIHATPLTQVFESNEDHRGNDKENNNLKQKRPVGNKEAVRKYREKKKAQIALLEEEVKKLRLLNQQLLRKLQAHQYLEAEVLRLRSILIELRGKIDTELGTSPFQNMCNSTPNFQRG* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00962 121 CDD bZIP 32 92 - -
Pte1g00962 121 Coils Coil 40 74 - -
Pte1g00962 121 MobiDBLite consensus disorder prediction 1 43 - -
Pte1g00962 121 Gene3D - 18 96 - -
Pte1g00962 121 PANTHER CCAAT/ENHANCER BINDING PROTEIN 16 105 IPR031106 GO:0003700|GO:0006351
Pte1g00962 121 SMART brlzneu 24 94 IPR004827 GO:0003700|GO:0006355
Pte1g00962 121 MobiDBLite consensus disorder prediction 18 43 - -
Pte1g00962 121 Pfam Basic region leucine zipper 32 77 IPR004827 GO:0003700|GO:0006355
Pte1g00962 121 SUPERFAMILY Leucine zipper domain 32 80 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00962 Pte-Chr1 20482569 20484216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00962 4 119 bZIP Transcription Factor Family AT4G35040 48.739 3.82e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pte1g00962 bZIP_2 1.1e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00962 K25785 - qsa:O6P43_029626 137.887