Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00949 ATGGGGATGGTGTTAATGAATTTAATGGTAACACTGTTGATTCGTCATCTTATCAAAGATACGATAGTCCAACAGATTGCGAGGTGGATAGAACAGATTCTACCTTTCTCATTGTTGTTACTGGTGGTTTTCATTCGACAGCATTTGCAAGGTTTCTTTGTTACAATTTGGATTTCAGCCATCTTGTTCAAATCAAATGATATTGTGCGGAAGCAAACAGCTCTAAAGGGAGATAGGAGGACCTCAGTTCTTTTTGGCATCTCTATGCTGTTCATTCTTCATGTAATCTTCATTTATTGGTGGTACCAAAATGATGACATTCTATATCCATTGGTCATGATTCCTCCAAAGACTGTGCCTCCATTCTGGCATGCTATATTCATAGTTCTGGTAAATGATACAATGATGAGGCAGGCTGCAATGGCTATCAAATGTTTGCTTCTTATCTACTATAAGAATGGAAGAGGCCACAACTTCCGTCGCCAGGGTCAAATGTTAACCCTAGTTGAGTATGCACTTCTGCTGTATCGTGTTTTGCTACCAACACCAGTCTGGTACCGTTTTTTCTTGAACAAGGACTACGGAAGCCTATTTTCATCACTGACTACAGGATTGTATTTAACTTTCAAATTAACATCTGTTGTTGAGAAGGTCCAATGTTTCTTTTCTTCCTTGAAAGCGTTATCTCGGAAGGAAGTACATTATGGGGTGAATGCCACGCTGGAACAGGTCAATGCAGCAGGTGATCTCTGTGCCATTTGTCAGGAGAAGATGCATGCTCCAATCATTTTGCGCTGTAAACATATCTTCTGTGAGGAGTGTGTCTCTGAATGGTTTGAGAGAGAACGAACTTGCCCACTATGCAGGGCATTGGTGAAATCAGCAGATCTAAGAACCTTTGGGGATGGATCCACAAGTCTCCTGTTTCAGTTATTCTGA 939 0.4089 MGMVLMNLMVTLLIRHLIKDTIVQQIARWIEQILPFSLLLLVVFIRQHLQGFFVTIWISAILFKSNDIVRKQTALKGDRRTSVLFGISMLFILHVIFIYWWYQNDDILYPLVMIPPKTVPPFWHAIFIVLVNDTMMRQAAMAIKCLLLIYYKNGRGHNFRRQGQMLTLVEYALLLYRVLLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQCFFSSLKALSRKEVHYGVNATLEQVNAAGDLCAICQEKMHAPIILRCKHIFCEECVSEWFERERTCPLCRALVKSADLRTFGDGSTSLLFQLF* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00949 312 SUPERFAMILY RING/U-box 242 294 - -
Pte1g00949 312 Pfam Zinc finger, C3HC4 type (RING finger) 249 294 - -
Pte1g00949 312 ProSitePatterns Zinc finger RING-type signature. 266 275 IPR017907 -
Pte1g00949 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 299 IPR013083 -
Pte1g00949 312 SMART ring_2 251 288 IPR001841 -
Pte1g00949 312 CDD RING-HC_RNFT1-like 249 289 - -
Pte1g00949 312 ProSiteProfiles Zinc finger RING-type profile. 251 289 IPR001841 -
Pte1g00949 312 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 23 312 IPR044235 GO:0061630|GO:1904294
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00949 Pte-Chr1 20318815 20322258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00949 23 313 C3H Transcription Factor Family AT5G01960 79.038 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00949 - K22379 qsa:O6P43_020068 538.88