LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte1g00946	ATGGTAACCTCTCAATTTTCTTTGGTCAATGGGAATGTTGGGAGAAAGAATGGATTTCAGGGTAAGGTGATAATAGGAACTGATCCACATACTGAGTTTGTATTCTCTGACTTACTCGGTGAAGTTCCAGCTGAAGCCGAAATAGAACTCATCGATGAGAATCTTAGAACACCGATCTCATCAGTAAAATATCCAAATAAACCTTCTTCCGATGATGAGCTTGTCATGCACTTGATATCAAAGGACTTTGAAAGTGATGGCAGCTCAAATGGGAGTCAAGACTCTTCAGAGGTTGTCGAGGAAATATGTGATGGCAAGCATGATGATTCTGATGGAGTAAAATTCAATGAACAAATCAATGATATGGGTATAAATCGCGGGACCATCGGGGTTGATGATTTTGAAGTTTTGAAAGTTGTTGGTCAGGGTGCCGTTGGAAAGGTCTACCAGGTTAGGATGAAAGGTACTTCTGAAATATATGCGATGAAGGTGATCAACAAGAATAAGGTCCTAAAGAAAGGTCTCGTTCACCATATACTATCTGAAAGGATTATCTTGGAGAAAGTGGATCACCCTTTTGTTGTGAGGCTGCGATACTCATTTCAAACCAAATATAGATTGTACCTTGTGCTAGATTTCATCAACGGCGGTCCCCTGTCCTTTCATCTCAAACATCAAGGGCTTTTCAGGGAGGATTTGGCACGTGTCTACGCCGCAGAGATTGTTTCTGCAGTTTCACATCTCCACAACCGTGGCATAATGCACAGGGATCTTAAGCCCGAAAACATTCTCCTAGATGCAGATGGTCATGTAGTGTTAACCGATTTCGGCCTGGCTTCTGAGTCGGAAAGATCGACTTTCTTGTGCGGAACTATAGAATACATGTCTCCAGAACTTGCACAGGGTAAAAGTTATGGCAAATCAACTGATTGGTGGAGTGTTGGAATCATACTATATGAAATGCTTACCGGGAAGCTTCCTCACAGAGGTGGAGACTGCAATAAAGTCCAGCAGAAAATAATAAAGGAAAAGATCAAGCTTCCAGGATTTTTAACAAGTGAAGCACACTCTTTGCTCAAAGGGATGTTGCAGAAAGAACCCAGCAGACGACTGGGGAATGGACCTAATGGGAGTGAGGAGATCAAGACACACAAATGGTTTAAGTCAACCAACTGGAAGAAATTGGAAGCTAGGGACATTACTCCAAGCTTTATCCCCGAAGTTTCTGGAAAACACTGTGTTGCCAACTTTGACGAGTACTGGACCAAAATGTCTGTCTGTGTTTCTCCACCAGGTAGCCCCAAATCCAGAGGCAATTCCTTCATAGGGTTTCCTTTCGTCCAATCTCTATAA	1353	0.425	MVTSQFSLVNGNVGRKNGFQGKVIIGTDPHTEFVFSDLLGEVPAEAEIELIDENLRTPISSVKYPNKPSSDDELVMHLISKDFESDGSSNGSQDSSEVVEEICDGKHDDSDGVKFNEQINDMGINRGTIGVDDFEVLKVVGQGAVGKVYQVRMKGTSEIYAMKVINKNKVLKKGLVHHILSERIILEKVDHPFVVRLRYSFQTKYRLYLVLDFINGGPLSFHLKHQGLFREDLARVYAAEIVSAVSHLHNRGIMHRDLKPENILLDADGHVVLTDFGLASESERSTFLCGTIEYMSPELAQGKSYGKSTDWWSVGIILYEMLTGKLPHRGGDCNKVQQKIIKEKIKLPGFLTSEAHSLLKGMLQKEPSRRLGNGPNGSEEIKTHKWFKSTNWKKLEARDITPSFIPEVSGKHCVANFDEYWTKMSVCVSPPGSPKSRGNSFIGFPFVQSL*	451

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte1g00946	450	CDD	STKc_AGC	140	387	IPR045270	GO:0004674\|GO:0005524
	Pte1g00946	450	SMART	pkinase_C_6	388	448	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Pte1g00946	450	FunFam	Non-specific serine/threonine protein kinase	132	237	-	-
	Pte1g00946	450	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	253	265	IPR008271	GO:0004672\|GO:0006468
	Pte1g00946	450	SMART	serkin_6	134	387	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte1g00946	450	PANTHER	RIBOSOMAL PROTEIN S6 KINASE	100	446	-	-
	Pte1g00946	450	Gene3D	Transferase(Phosphotransferase) domain 1	214	406	-	-
	Pte1g00946	450	ProSiteProfiles	AGC-kinase C-terminal domain profile.	388	450	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Pte1g00946	450	Gene3D	Phosphorylase Kinase; domain 1	132	428	-	-
	Pte1g00946	450	SUPERFAMILY	Protein kinase-like (PK-like)	131	440	IPR011009	-
	Pte1g00946	450	Pfam	Protein kinase domain	134	387	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte1g00946	450	FunFam	Non-specific serine/threonine protein kinase	214	406	-	-
	Pte1g00946	450	ProSiteProfiles	Protein kinase domain profile.	134	387	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte1g00946	Pte-Chr1	20293788	20296791	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte1g00946	1	448	AGC Kinase Gene Family	AT3G08720	54.936	3.40e-169	482

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC-Pl	Pte1g00946		Pkinase	1.4e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte1g00946	K04688		-	qsa:O6P43_020074	484.182