Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00944 ATGGACAAGAAAATGTGCAACTCTTCTCAAGATCCTGAGGTCAGAAAAGGGCCATGGACTATGGAGGAGGATATGATTCTGATCAACTATATCGCAAATCACGGTGAAGGTGTTTGGAACACTTTGGCCAAATCTGCAGGTCTCAAGAGAACTGGAAAGAGTTGTCGTCTCCGGTGGCTAAACTATCTTCGTCCTGATGTCAGGAGAGGGAATATTACACCAGAAGAACAGCTTTTGATCATGGAGCTTCATGCAAAGTGGGGAAACAGGTGGTCAAAAATCGCAAAGCAACTGCCTGGAAGAACTGACAATGAGATAAAGAATTACTGGAGGACAAGGATCCAGAAGCACATCAAGCAAGCTGAGAACTTCCAACAGCAGAGTTCTCATCATGAGGTGATCGAACATGGAAGCAGCAGCAGCCATGTATCTGGTCTCACTGAACCAATGGAGACCTTCTCTCCAACAACACACCAAGGCATGGAGCCATTTCCAAACATATTCCCTAGTGAAGTACAGCCAAGTACCGACAACTATTGGAGCATGGAGGATCTCTGGTCCATGCAACTACTTAATGCAGATTGA 585 0.4547 MDKKMCNSSQDPEVRKGPWTMEEDMILINYIANHGEGVWNTLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKQLPGRTDNEIKNYWRTRIQKHIKQAENFQQQSSHHEVIEHGSSSSHVSGLTEPMETFSPTTHQGMEPFPNIFPSEVQPSTDNYWSMEDLWSMQLLNAD* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00944 194 Gene3D - 73 139 - -
Pte1g00944 194 Gene3D - 16 68 - -
Pte1g00944 194 SMART sant 15 65 IPR001005 -
Pte1g00944 194 SMART sant 68 116 IPR001005 -
Pte1g00944 194 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Pte1g00944 194 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Pte1g00944 194 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 134 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pte1g00944 194 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Pte1g00944 194 CDD SANT 73 112 IPR001005 -
Pte1g00944 194 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Pte1g00944 194 FunFam Myb transcription factor 16 68 - -
Pte1g00944 194 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Pte1g00944 194 CDD SANT 18 63 IPR001005 -
Pte1g00944 194 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Pte1g00944 194 FunFam Myb-related protein 305 73 143 - -
Pte1g00944 194 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00944 Pte-Chr1 20246483 20249301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00944 10 194 MYB Transcription Factor Family AT3G01530 58.247 3.71e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte1g00944 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00944 K09422 - gmx:778046 324.709