Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00934 ATGACGAGGTTGCGGTCGACGGAAGATCTGGATTCGTACTTAGATAAAAATGTGAAGGAATCTAATACGAACAGATCGGCTAGAGGGTTTTACTATAAACCCGAGAATAATGCCAGAAAAGGTTTAATTTCATCATCATCTTCTTCGTCTAGATATGACAGAGATCGATCCTTGAATGAAGATAGAGATAGAGATAGTTCTAGGCATGTAAGGAAACGATCTGAACATGATTTTGAGAGTTTTGAACGTAGAAAAGGGTTTGATCGGTTTAGAGATAGTGGCGACAGTAGAGGGTATGGTGGTGGTGGAGGCGGAGGAGATGGGAGTTCAATACATAGGTCTGAGAGTTTTTGCGTGTCAAGGAGAGATTTTCCTAAAGGGTTTCGATCTGAGAGAGATCGTTCAAGGCGGGAAGGGAGTGTGACTTCTTGGAGGAGATTCGGGAGTGGGGTTAAGGATTTTGAGGAGGGTAGTAGAGGAAACAGAAGTGGACTGGAAGATAAAGGAATTGGGAAGTCACCAAAAGGTTTGAAAGATGTCAAGTCTACTACGTGGTCCAAGGAATCTGGTAGTGAGCAATATAGATTGAAGTCTCCGCCAAGAGGGTTTAGATATGAGAAGGAGAGGTCTAAGTCTAAATCCAAGTCACCAACTTGGTCAAAGGATTCAGCTAGTGAGCCATCAAGAAGTGAGCAATCTAAGAGTGTTGAGATGAGAAAGGCTGAGGATTTGCAAGTTGTGAGTGGGGGAAGTAGTGAAATGGAAGAAGGGGAATTGCAGCCTGAGCCGACGGCTAATGCTGTACCTCAAGTTGAAGCTGGAAGTTGCGAGAAGTCTGTTCAGTTAGGAGCTGATAATGATAAGGGAGTTCAGAATGAGCGCAGGGTGGAAGACACTGAGGTGGTTGTTGAGAAAAAATCAGAATTAGTGAACAAGAGAGAATTTGAACCAAATAATGATACGAAAGACAATAATAAAAATGATGAAGTTGTTGATAAGTTTCCGGATGTTATAAATAACTCGAGTGACAGAAGTCAGTGCAATGAGGATGCGGTTGATACTCCTACTAATAATGGTGGCCAAGAAAATGGGCGTACCAAAGGAAATTCTGATGCTGAGGAGAAAGTGCAGAAGGAAATGATGGGTGCGATGCTGCAATCTAGTGCTGAAGAGGAACTTAAGCAACATGGGGGTATAGATCTTGAGATTAAAGCAGAGGAAGTTGATTTGCATGACATTAATAAGGAAGCTTCCAAAGAAAATGAAGGACCTGAAGTGAATATGGCAATGACACCGGAAGCTATAACAATGGATTTGAGGGACAAAGGCAAAAGTTTGTCTAAGATTTGCTCCAAAGAAGATGATCTAATGAATGATAGACATTCTAGAGATCTTACAACTTGCACGGATGATGCACTGGAAGGACCAAGCTCAAGGGGTTTTGAGCTGTTTTCCAGTTCTCCTGTAAGAAAAGCTGAGAAGAAAGACCAACCAAATAATGTTAAGCAGAAAGATGAAAATTCAGCACTGATGCCCCTTGATCTTTCTCTAAGCTTACCAAATGTGCTGTTACCAATTGGAGCTAGTGGAACTGTCCCAGTTCCTGTATCCCCATGCCGAAGCTTGCAGTCACTGAGTTCTTTTCGTACCAACTCTGATGGATTTACTGCATCAATGTCTTTTTCAGGTTCTCAGTCATTTTTTCACAATCCAAGCTGTTCTCTTACACAAAATTCAGTGGACTATGAACAATCTGTTGGCAGCAAGCCCTTATTTCAAGGAATAGATCAAATTTGTCGGGGAATATATGAGGGGCAACCTCAAAATGATTGTAAGCAGGACACTCCCTTGTGCCAAAGAGTTATGATAAATGGAAATTCGTCTATTCACCAGGCTCAAGCATCATATGGCATTTCTGATGGTCAAGCTATGCAAGGGCAACATTTGAGGGTTGCAGAACGGAACTCAAAAATACCTGATGGTCTTGAGAGGCAATTGAGTTTTCATAAGCAATTGTCAGGACAATCAAGGTGCCATGAAGATGCCAGATCTCCTGCACGCAGTAATGGGTCTCGTGAAATCGAATCAGGTTATAGTATCGACAGGAAGCGAAGGGAGAAGAGTGGTGCGCACTTGTATAGGACTACCAGCCAAAAGGGGCAAGAACAACATCTAAAGGGTGGATCTGAATTTGTTGAATCGTTCGTGGCAAGGACAGTTTCTGAACCAGTACATATAATGGCTAAGAAGTTTCATGAGATGACAGAGCAGTCAATAGTGCACTTGAAAGAGGGAATTAGAGATATCATGTTGAATTCTGACAGATGTGGGCAAGTAGTTGTATTTCAGAAAGTCTTGCAGAACAGAACTGATATAACAACAGAAGTTCTTAAAAGGGCACACAGAGCGCAGTTAGAAACCTTGGTTGCTATAAAAACTCTTTCAGTGGATTTTCTCCAGTCAGAAAGCGTTGCCTCTTCTGATTTAGCAGAGATTTTCATAGGATCGAAATGCAGAAATCCTAATTGTCGAAGCCCGATAGAGGAATGTGATTGCAAGGTTTGCTCACAGAAGAGTGGTTTTTGCAGTAATTGCATGTGTCTTATCTGTGGAAAGTTTGACATGGCGGCTAATACATGTAGTTGGGTTGGGTGTGATGTCTGCCTTCATTGGTGTCATACAGACTGTGGGATACGGGAATTTTATATTAGAAATGGATGCAATACATCTGGATCACACGAAATGACTGAGATGCAGTTCCACTGTGTTGCTTGTGATCACCCCTCTGAGATGTTTGGCTTTGTTAAGGAGGTCTTTCAACATTTTGCAAAGGAATGGACTGTTGAAACCTTTTGCAGAGAGCTTGAATATGTGAAGAGGATATTTTCTCCCAGCAGAGACTTGAGAGGTAGAAGACTGCATGATATTGCTGGTCAAATGCTACTGAGATTGGCAAATAGATCCAATCTCCCCGAGGTCTACAGTTATATCATGGCTTTCCTTAATGATACTGATTCTTCCAAAACCGGCGCAATGGCTGTTTTATCTAGTAAAGAACAAATGAAGCAAGTGAAAGAAAGCAGCGGGGTTGCTGTGCCGAGCCAAGAAGCTCCATGGCTAAAATCACTTTACTCAGAAAAGGCCTCAAAGACAGATAGGAGGAACGATGTGGTTTCTAGCCTTAAGTATGATCGAAGTGATAAACGAATAGCAGCTGATCAAGAGTTGCAGACCAGTACGAATAAGGAATTTGGCTTTGATAACTTAGAGAGCATTATTAAAATCAAATTGGCTGAAGCGAAAATGTTCCAGACTCGTGCTGAAGAAGCAAGAAGAGATGCTGATGGCTTGAAGCGCATTGCCATTGCAAAGAATGAGAAAATTGAGGAAGAATACGAGGCCCGCATAACAAAGCTGCGATTGGTTGAGACTGAGGAAATGCATAAACAAAAATTCGAGGAGCTCCAGGCTGTGGAAAGAGCTCATATGGAGTACTTCAACGTGAAGGCGAGAATCGAGGCTGACATGAAAGATCTCCTGTCCAAAATGGAAGCCACTAAAAGAAACCTTACCCTGCGATCGGCAAATCACTAG 3594 0.4221 MTRLRSTEDLDSYLDKNVKESNTNRSARGFYYKPENNARKGLISSSSSSSRYDRDRSLNEDRDRDSSRHVRKRSEHDFESFERRKGFDRFRDSGDSRGYGGGGGGGDGSSIHRSESFCVSRRDFPKGFRSERDRSRREGSVTSWRRFGSGVKDFEEGSRGNRSGLEDKGIGKSPKGLKDVKSTTWSKESGSEQYRLKSPPRGFRYEKERSKSKSKSPTWSKDSASEPSRSEQSKSVEMRKAEDLQVVSGGSSEMEEGELQPEPTANAVPQVEAGSCEKSVQLGADNDKGVQNERRVEDTEVVVEKKSELVNKREFEPNNDTKDNNKNDEVVDKFPDVINNSSDRSQCNEDAVDTPTNNGGQENGRTKGNSDAEEKVQKEMMGAMLQSSAEEELKQHGGIDLEIKAEEVDLHDINKEASKENEGPEVNMAMTPEAITMDLRDKGKSLSKICSKEDDLMNDRHSRDLTTCTDDALEGPSSRGFELFSSSPVRKAEKKDQPNNVKQKDENSALMPLDLSLSLPNVLLPIGASGTVPVPVSPCRSLQSLSSFRTNSDGFTASMSFSGSQSFFHNPSCSLTQNSVDYEQSVGSKPLFQGIDQICRGIYEGQPQNDCKQDTPLCQRVMINGNSSIHQAQASYGISDGQAMQGQHLRVAERNSKIPDGLERQLSFHKQLSGQSRCHEDARSPARSNGSREIESGYSIDRKRREKSGAHLYRTTSQKGQEQHLKGGSEFVESFVARTVSEPVHIMAKKFHEMTEQSIVHLKEGIRDIMLNSDRCGQVVVFQKVLQNRTDITTEVLKRAHRAQLETLVAIKTLSVDFLQSESVASSDLAEIFIGSKCRNPNCRSPIEECDCKVCSQKSGFCSNCMCLICGKFDMAANTCSWVGCDVCLHWCHTDCGIREFYIRNGCNTSGSHEMTEMQFHCVACDHPSEMFGFVKEVFQHFAKEWTVETFCRELEYVKRIFSPSRDLRGRRLHDIAGQMLLRLANRSNLPEVYSYIMAFLNDTDSSKTGAMAVLSSKEQMKQVKESSGVAVPSQEAPWLKSLYSEKASKTDRRNDVVSSLKYDRSDKRIAADQELQTSTNKEFGFDNLESIIKIKLAEAKMFQTRAEEARRDADGLKRIAIAKNEKIEEEYEARITKLRLVETEEMHKQKFEELQAVERAHMEYFNVKARIEADMKDLLSKMEATKRNLTLRSANH* 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00934 1197 MobiDBLite consensus disorder prediction 199 216 - -
Pte1g00934 1197 MobiDBLite consensus disorder prediction 488 502 - -
Pte1g00934 1197 MobiDBLite consensus disorder prediction 116 141 - -
Pte1g00934 1197 MobiDBLite consensus disorder prediction 338 366 - -
Pte1g00934 1197 CDD PHD_OBE1_like 866 925 IPR047578 -
Pte1g00934 1197 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 26 1190 IPR004082 -
Pte1g00934 1197 MobiDBLite consensus disorder prediction 1 22 - -
Pte1g00934 1197 MobiDBLite consensus disorder prediction 674 688 - -
Pte1g00934 1197 MobiDBLite consensus disorder prediction 149 175 - -
Pte1g00934 1197 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 873 893 IPR004082 -
Pte1g00934 1197 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 829 850 IPR004082 -
Pte1g00934 1197 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 804 819 IPR004082 -
Pte1g00934 1197 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 946 965 IPR004082 -
Pte1g00934 1197 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 789 804 IPR004082 -
Pte1g00934 1197 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1126 1148 IPR004082 -
Pte1g00934 1197 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 750 772 IPR004082 -
Pte1g00934 1197 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1087 1107 IPR004082 -
Pte1g00934 1197 MobiDBLite consensus disorder prediction 217 231 - -
Pte1g00934 1197 MobiDBLite consensus disorder prediction 670 696 - -
Pte1g00934 1197 Pfam Coiled-coil region of Oberon 1058 1180 IPR032535 -
Pte1g00934 1197 Coils Coil 1169 1189 - -
Pte1g00934 1197 MobiDBLite consensus disorder prediction 53 95 - -
Pte1g00934 1197 Coils Coil 1141 1161 - -
Pte1g00934 1197 MobiDBLite consensus disorder prediction 1 299 - -
Pte1g00934 1197 MobiDBLite consensus disorder prediction 311 375 - -
Pte1g00934 1197 MobiDBLite consensus disorder prediction 311 333 - -
Pte1g00934 1197 MobiDBLite consensus disorder prediction 179 193 - -
Pte1g00934 1197 MobiDBLite consensus disorder prediction 469 507 - -
Pte1g00934 1197 Pfam PHD - plant homeodomain finger protein 838 959 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00934 Pte-Chr1 20143734 20148070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00934 838 962 PHD Gene Family AT5G57380 27.200 1.12e-07 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00934 - - qsa:O6P43_029561 1314.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g00934 1 20143734 20148070 Pte1g00934 1 20143734 20148070 RCT