Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00924 ATGAGGCCAGCACCGGTGGCTTCCTCGCCAGTTGACCATGCCATATACATGACTCCTAAGCTATATTCTATAACGAAATCAGATAGTAATTACTCATACAATCCAAGGTTGAGGACGTACTATGCTTCTGGTAGTTTTGAAGCAAACTTAGCCATAATTCTTGTGGTTCTCATCAGTGCACTGATATGTGCTTTGGCTCTCAACAGTGCCATTCGGTGCTTCCTAAGAGGCCATTCTTCGCAGACCACACAGCAGCAGCAAAGGCAGGAGATAAATTCAGAAGATGATAAAGTTGACGTGGTGACAGCTGCAGCTACGGCAATGGTATTTTCTTCTGGGATTAAGCTGGCAGGAACAGAAGCTGAGTGCGCCATTTGCTTATCTGAGTTTGTGGTGGGTGAGGAAATTCAGGTGCTGACAAAGTGCAAGCATGGCTTTCACTTGCAATGCATTCAGAAGTGGTTGCATTCACAGTCATCATGTCCTACTTGTCGTAGTGCTTGTTTGTAG 510 0.4529 MRPAPVASSPVDHAIYMTPKLYSITKSDSNYSYNPRLRTYYASGSFEANLAIILVVLISALICALALNSAIRCFLRGHSSQTTQQQQRQEINSEDDKVDVVTAAATAMVFSSGIKLAGTEAECAICLSEFVVGEEIQVLTKCKHGFHLQCIQKWLHSQSSCPTCRSACL* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00924 169 CDD RING-H2_EL5-like 122 165 - -
Pte1g00924 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 168 IPR013083 -
Pte1g00924 169 SUPERFAMILY RING/U-box 122 168 - -
Pte1g00924 169 PANTHER RING-H2 FINGER PROTEIN ATL78 32 167 IPR044602 GO:0016567|GO:0016740
Pte1g00924 169 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Pte1g00924 169 Pfam Ring finger domain 122 165 IPR001841 -
Pte1g00924 169 SMART ring_2 123 164 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00924 Pte-Chr1 19948189 19949066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00924 32 167 C3H Transcription Factor Family AT5G47610 50.000 9.00e-43 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00924 K19040 - tcc:18605908 152.14