Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00902 ATGGAAGAACCTCCGGCGAATGACGTTTGTTCGGTTTGCCATGGCAGTTTCAACAGTCCTTGTCAAGCCAATTGCTCTCACTGGTTTTGTGGAAATTGTATAATGCTTGTATGGCATCATGGGTCAGCTATTAATCCTTGTAAATGCCCCTTATGTCGACGTGAAATTACCTTGCTCATTCCTAGTGAGTCTTCTCGAAGGCAGCGTCATATCCCTGATGTTTCAGAAGTTCTAGTGAAGATTGAAAGATATAACCGTTTATTTGGCGAACACGAAAGTGGTCTTTTTCAGAGAATGCAAGACCTTCCTTTTCTACTTCGAAGACTTTTACGAGAACTAATGGATCCCCAAAGGACACTTCCTCTTGTCATCAGGGCCCGCGTTTATATTGCCATGATAGTTAGTGCTATCTACGTTATCAGCCCTGTGGACATTATTCCAGAAGGCATATTGGGTATATTTGGTCTAATGGATGATCTCCTCATCGCGCTAGTCTGCTTCCTCCATGTGGCCGCCATTTATCGGTCTGTCCTCTATTTTCGTCATGGAGGTTCTTGA 558 0.4373 MEEPPANDVCSVCHGSFNSPCQANCSHWFCGNCIMLVWHHGSAINPCKCPLCRREITLLIPSESSRRQRHIPDVSEVLVKIERYNRLFGEHESGLFQRMQDLPFLLRRLLRELMDPQRTLPLVIRARVYIAMIVSAIYVISPVDIIPEGILGIFGLMDDLLIALVCFLHVAAIYRSVLYFRHGGS* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00902 185 SUPERFAMILY RING/U-box 7 60 - -
Pte1g00902 185 PANTHER UNCHARACTERIZED 2 182 IPR038896 GO:0061630
Pte1g00902 185 ProSiteProfiles Zinc finger RING-type profile. 10 53 IPR001841 -
Pte1g00902 185 SMART ring_2 10 52 IPR001841 -
Pte1g00902 185 CDD RING-HC_RNF113A_B 3 61 - -
Pte1g00902 185 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Pte1g00902 185 Pfam Protein of unknown function (DUF1232) 130 163 IPR010652 -
Pte1g00902 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 101 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00902 35 186 C3H Transcription Factor Family AT1G72175 75.658 1.44e-69 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00902 K15707 - twl:119982266 315.464