Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00875 ATGGAGTGGAAGACAGATGAGATGCTTATACCATACAAGCAAATGTGTGCTCAGAGGAAGGTTCAAGTTGAAGTGATTGTGATTGAATCTGAGGATGTGGCAATCGCAATAACGGAGGTGGTTGCTAAGCTTGCCTTCACAAAGCTTGTCGTGGGAGCCTCATCTCATGGCATATTCCGAAGAAAAATTAAAGGCCTATCTGCAAAGATCTCTGTTTGCACTCCAAGATTTTGCACTGTTTATGCAGTGTCAAAAGGAAAACTGTCTTCTTTACGGCCATCTGATGTACAGATAGATGAAAGCATTAAAGATGATGACAGTGAATCAAGTTGTTCGAACAACAGTTCATCTAACTGCACTTCGATTTCTCAAACAGATTCTAGCTCAATTTGTTCACTAGCTCCTTCTCAACTGCCAGGCCTAACAACACAGCGGCTTCAAGCTCTTTCAGCTATCAATGACACCCTTCTCAACACAAAGGAATTATCCCCTGAAAGGATCCACTCTAGGTGCCAGTCCTTAGATATTGGGAATGATTATATTACTTCGTGCTCATCTACTGGGGATTCAGTTACACAATGTTCCTTGAGTAGGATCTGTAGTTGCCGAAGCACTTCAGCCAACGAATTATGGATTTCAGATCAGTCCTCAATGAAAAATGAACCTACTCAGTACCCATTATCTAACAACCAGGAAATGATTAACCTTGAGCTGGAGAAATTGAGAACTGAACTAAAACGTGCCCAAGGAATGATCTCAAAAGTGCAAGGCAAGAATCTTGATGTTTCACAAAAGCTGAAAAATTTAAGTCAACGGAGATTGGAGGAAACAAGAAAGTTGAAAGATGTAACTGTTAAGGAAGAGGCTGCCAGAGAATTAGCCACAAAAGAGAGAGAGAGGTCTGAATCTGCAGCGAGACAAGCTGCATATCTGAAAGAATGTGCTGAAAGGGAGGCGGCAGAGACAAAGCTGGTAGAAACAAAAGTTCTAAATGCAGCCAAAGAAAATAAAAAGCTTGAGGATGCTCTAATGGGTTCAGAGAGTCACTATCGAGTGTTTACTTGGGAAGAGATCATAACTGCCACCTCATCTTTTGCTGAGGACTTGATGGTTGGCTCCGGTGCATATGGAACGGTGTACAGATGCAATTTGTATCATTCAACTCTGGCTGTAAAAGTTCTTCGCTCTATTGAGAGTCAGAAAAGCAAGCAATTCCAAAAAGAGTTAGAGATTTTAAGCAGAATCCATCATCCACATTTGCTCCTGCTATTTGGTGCTTGTCCTGACCGTGGATGTCTAGTATACGAGTTCATGGAGAATGGAAACTTGGAAGACCGACTACTTCGAAAGAACAGCACCCCCCCAATTCCATGGTATGAGAGGTATCGAATTGCATGGGAAGTAGCATCAGCTCTAGCGTTTCTTCACAATTCAAAGCCAACACCGATTGTTCACCGTGATTTGAAGCCTGCAAACATTTTGCTTGACAATAACCTTGTGAGCAAGATTGGTGACATCGGGCTCGCAACTATGCTCTTTTCTGACTCTACATTACCTAGTATATACAAAGATACTGCGCCTGTGGGAACGCTCTGCTACATCGATCCTGAATATCAAAGGATTGGCTTGGTCTCTCCCAAATCAGACATTTATGCGTTTGGGATTGTAATTTTGCAACTCCTGACTGGAAAGGAAGCAATAGCATTGGTCCATTTAGTAGAAACGGCAATGGATGATGGAAAGTTGAAAGATATTCTAGATCCAATGGCTGGAGATTGGCCATTTGAGGAGACATTTGAATTCGCTAAATTAGGACTTAGCTGTGCTGAAATAAGGCGCAGTGACAGGCCTGATCTGGATAGTCAAGTTCTTCCAGCTCTACAGAGGCTAAAAGAAGCTGCTGATAAAGCTAAAGGTTCATCTTCAAGTTTTATTTCTAAAGCACCCAATCACTTCGTCTGCCCCATACTTAAGGATGTGATGAACGATCCATGCGTCGCAACCGATGGATTCACATATGATCGAAAAGCAATTGAAAGATGGCTTGAAGAAAACGACAATTCACCAATGACAAATATGCCTTTGCCAAACAAGAATCTTGTTCCTAATTATACTTTGCTATCTGCAATTTTGGAATGGAAGGCTGAAAGGAAATTATGA 2160 0.4176 MEWKTDEMLIPYKQMCAQRKVQVEVIVIESEDVAIAITEVVAKLAFTKLVVGASSHGIFRRKIKGLSAKISVCTPRFCTVYAVSKGKLSSLRPSDVQIDESIKDDDSESSCSNNSSSNCTSISQTDSSSICSLAPSQLPGLTTQRLQALSAINDTLLNTKELSPERIHSRCQSLDIGNDYITSCSSTGDSVTQCSLSRICSCRSTSANELWISDQSSMKNEPTQYPLSNNQEMINLELEKLRTELKRAQGMISKVQGKNLDVSQKLKNLSQRRLEETRKLKDVTVKEEAARELATKERERSESAARQAAYLKECAEREAAETKLVETKVLNAAKENKKLEDALMGSESHYRVFTWEEIITATSSFAEDLMVGSGAYGTVYRCNLYHSTLAVKVLRSIESQKSKQFQKELEILSRIHHPHLLLLFGACPDRGCLVYEFMENGNLEDRLLRKNSTPPIPWYERYRIAWEVASALAFLHNSKPTPIVHRDLKPANILLDNNLVSKIGDIGLATMLFSDSTLPSIYKDTAPVGTLCYIDPEYQRIGLVSPKSDIYAFGIVILQLLTGKEAIALVHLVETAMDDGKLKDILDPMAGDWPFEETFEFAKLGLSCAEIRRSDRPDLDSQVLPALQRLKEAADKAKGSSSSFISKAPNHFVCPILKDVMNDPCVATDGFTYDRKAIERWLEENDNSPMTNMPLPNKNLVPNYTLLSAILEWKAERKL* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00875 719 SMART Ubox_2 651 713 IPR003613 GO:0004842|GO:0016567
Pte1g00875 719 Gene3D Phosphorylase Kinase; domain 1 343 437 - -
Pte1g00875 719 SUPERFAMILY Protein kinase-like (PK-like) 346 620 IPR011009 -
Pte1g00875 719 Coils Coil 231 258 - -
Pte1g00875 719 ProSitePatterns Protein kinases ATP-binding region signature. 371 392 IPR017441 GO:0005524
Pte1g00875 719 ProSiteProfiles U-box domain profile. 647 719 IPR003613 GO:0004842|GO:0016567
Pte1g00875 719 ProSiteProfiles Protein kinase domain profile. 365 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte1g00875 719 Pfam Protein kinase domain 370 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte1g00875 719 SMART serkin_6 365 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte1g00875 719 PANTHER OS02G0152300 PROTEIN 2 712 - -
Pte1g00875 719 Pfam U-box domain 648 718 IPR003613 GO:0004842|GO:0016567
Pte1g00875 719 Coils Coil 286 306 - -
Pte1g00875 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Pte1g00875 719 SUPERFAMILY RING/U-box 638 718 - -
Pte1g00875 719 CDD RING-Ubox_WDSUB1-like 649 703 - -
Pte1g00875 719 Gene3D Transferase(Phosphotransferase) domain 1 438 647 - -
Pte1g00875 719 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 648 719 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00875 Pte-Chr1 17204693 17210539 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00875 3 717 U-box Gene Family AT4G25160 50.067 0.0 712
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pte1g00875 Pkinase 6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00875 - - qsa:O6P43_029812 926.776