Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00870 ATGGCTCCCATCTCACTCTCAGCCCGTTTTCAACAATCAGTGACTGCTAATGCGTTTCGGGCGTATCTCGCTGAGTTTATCTCCACGTTTTTCTATGCCTTTGCTGTGGTTGGATCTTCTATGGCTGCCAGAAAATTGATGCCTGATGCTGCCCTCGACCCCGCAAGTCTGGTTGTGGTTGCTGTGGGAAATGCCTATGCATTGTCATCGGCCGTGTACATTGCAGCAGACATTTCTGGGGGGCATGTGAATCCGGCTGTTACATTTGGACGCACAATTGGAGGCCACATCGATGTTTCCACTGCTCTCTTCTATTGGATCTCCCAGTTGGTGGGTTCTGTGATGGCTTGCCTTGTCTTGAAAGTCACAGTCGTTGGAATGCACGTACCAACGTATGGGATTGCAGAAGAGATGACTGGGTTTGGGGCATCTGTATTGGAAGGTGTGTTGACATTTGGACTGGTCTACACTGTTTATGCTTCCAAGGACCCCAGGCGCAGTGCACAGGGAGCATGCTTGGGAATTTTGGCAATAGGGCTAATGGGAGGAGCCAGTGTGTTTGCTCTAGGGCCCTTTTCCGGGGGGGTGACAAACCCAGCTTGCGCCTTCGCCACTGCAATCACTGCCGGCAGTTTTAAGAATCAAGCTGTGTATTGGGTTGGACCCTTGATCGGTGCTGCTATAGCTGGCCTTGTTTATGACAACGTAGTTTTCCCTGCTCAACCTGACGATTCTATCACAGGGGTTACAAGCCTTCGCATCTGA 765 0.5085 MAPISLSARFQQSVTANAFRAYLAEFISTFFYAFAVVGSSMAARKLMPDAALDPASLVVVAVGNAYALSSAVYIAADISGGHVNPAVTFGRTIGGHIDVSTALFYWISQLVGSVMACLVLKVTVVGMHVPTYGIAEEMTGFGASVLEGVLTFGLVYTVYASKDPRRSAQGACLGILAIGLMGGASVFALGPFSGGVTNPACAFATAITAGSFKNQAVYWVGPLIGAAIAGLVYDNVVFPAQPDDSITGVTSLRI* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00870 254 PRINTS Major intrinsic protein family signature 101 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g00870 254 PRINTS Major intrinsic protein family signature 20 39 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g00870 254 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g00870 254 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g00870 254 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g00870 254 PRINTS Major intrinsic protein family signature 64 88 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g00870 254 ProSitePatterns MIP family signature. 82 90 IPR022357 -
Pte1g00870 254 PANTHER AQUAPORIN-8 10 238 IPR034294 -
Pte1g00870 254 Gene3D Glycerol uptake facilitator protein. 4 248 IPR023271 -
Pte1g00870 254 Pfam Major intrinsic protein 15 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte1g00870 254 SUPERFAMILY Aquaporin-like 13 242 IPR023271 -
Pte1g00870 254 FunFam Probable aquaporin TIP5-1 4 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00870 Pte-Chr1 16954402 16955753 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00870 1 243 Major Intrinsic Protein MIP AT3G47440 60.494 7.69e-100 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00870 K09873 - qsa:O6P43_029843 374.015