Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte1g00850 | ATGACCTCGTCAGCTGCCCCCCATCATGTTATTGACGACGACGACGACGAGTTCGACTGGGAAGCAGCTGTTATGGAAATCGATGTAGCTTGCCGGAACACAAAGCCTTCCACTTCTACTTCCGCCTCTTGCTCTTCCAAGTTTGCCCCTTCGATTCATCGTTCAGTTTCTGACATACCCATTACTTCAGACATAAAAAAAAACTTCCCCAAGGCTTCTAGGCAGTCTACATTGGACAACTTCGTAGCTAAGAAGGGCCCGTTGCCGCAACCTTCAGCTCCGCCAACCACATCTCCAAAGGGTCTTGAAGCAGAGGATCGGAATTGCAGTGGAAGCGATGAAAGCCTTGGTTGTACTGACATTGATGCTGATGCAGCCAAAACTTGGATATACCCAGTTAATGTTCCCCTCCGTGATTATCAACTTGCCATAACCAAGTCAGCATTATTCTCGAACACATTGGTAGCATTGCCAACAGGACTCGGAAAAACACTTATCGCTGCTGTTGTTATGTATAACTATTTCAGATGGTTCCCCAATGGGAAAATAGTCTTTGCTGCTCCTTCTCGACCACTTGTCATGCAACAAATAGAAGCCTGCCATAATATTGTTGGAATACCGCAGAAATGGACAATTGATATGACTGGCCAACTGAATCCTAAAAGTAGAGCGATCTTTTGGAAAACAAAACGTGTTTTCTATGTAACTCCACAAGTTCTGGAGAATGACATCCACTCAGGTATATGCTTGGCAAAATATTTGGTTTGCTTGGTGATTGATGAAGCTCACAGAGCAATGGGAAATTATTCCTATTGTGTTGCAGTTCGTGAGTTGATGACCATACCGGTGCAGCTGAGAATATTAGCTTTAACAGCAACACCAGGATCAAAGCAGGAGACAATACAACAAGTTATTGATAATTTGAAAATCTCAGTACTTGAATATCGCAGTGAAAGTGATCTTGATGTCATCCCATATGTTCATGACCGGAAGCTACAGTTAGTTCAGGTTGCGATGGGCCGAGAAGCTGTGGAGATAGATAATAAGATCTTGCAAGTAATTCGTCCGATGACAGCTAGACTTTCTGCTATCGGTGTTCTTCAAAACAGAGACTATAACACTCTGAGTCCTTGTGAATTGCTTAAGATAAGGGAAAAATTTCGTGAAGCACCTCCTCCAGACCTTCCTCATGTCAAGTGTGGTGAAGTGGAAGGCTATTTTGGAGTTTTAATCTCTCTTTACTACATTCGTAAGATACTTTCAAGCCATGGGATAAGGCCGGCATATGAAATGCTTGAAGATAAGTTAAGTCAAGGGGCTTTTGCCCGATTCATGAGCAAAAATGGAGATATTTGGAATGCAAAACTCTTAATGCAGCAGAGCTTGGGACATGGAGCATCGAGTCCCAAGTTGTCCAAAATGTCAGAAGTACTGCTCGAACATTTCGAAAACCATGATCCAAAAAGCTCAAGAGTTATCATTTTCTCCAACTATAGAGGAAGTGTCAGGGATATAATGGATGCACTAAAAGACCTTGGTGAGTCCATCAGAGCTGCCCAGTTCATAGGCCAAAGTTCAGGGAAAGCAATGAAGGGTCAATCACAAAAGATACAACAGGCTGTTTTGGAGAAATTCCGATCTGGTGGATACAACATCATTGTGGCTACGTCTATTGGTGAAGAAGGCCTTGATATCATGGAGGTTGATTTAGTCATATGCTTTGATGCTAATATATCGCCTCTGAGAATGATACAACGCATGGGGAGAACTGGGAGGAAGCATGATGGCCGAGTTGATATCCTTACATGTGAAGGGCCAGAGTTGAAAGGTTACTTGCGTAAGCAAGCAAAAAGTAAGACTATAAGGAAGCATATGAGAAATGGAGGAACAAATAGCTTCAATTTTCATTTGAGCCCAAGGATGGTTCCCCATGTCTTTAAACCAGATGTTCAATTTGTTGAACTGACAATTGAGCAATTCATCCCCCGTGGAAAGCAAGTAAAAGAGGATCAGGATTCTGAGGTTCCAGCTTTTAGGGACAAACTTTCTGTTGCTGAAACTAATGTGGTTGAAAGATATTTTCTCCCCACTGGTGGAAATGCAAGGAAAACATCTCTTATTGCTTTTCCATACTATCAGACATTCCCTTCCAGAGTGCATACAGTACCACACTCAAATAGAACAATGATGTTGATAGATGCTATGCAAATTCTGCAAAGACCGTCACTTTCAGATCTCAAAGCTTCCTCTTTAGAGAATGGAAAGGTCCTAATTTCCACTGCCCCTTTGCTAAAATTGAATGAAAAATCACACTCCAGAGGAACACGAGGAAGCTCTGGGGTTTCACCTTTGGAACAAATTATGCTATCAAAGGATGCAGGGAAAGAACGAGATTCTCCAGCCAAATGCGTTATGAACTGCACTTCTCTCTCATCTAGATTACACAATTTAGGTGAACAGAAAGGGAAAACTTGTGAGGGTGAAGATGTTCCCTCTAACCTGATTATGGCTAGTGAGATGCCTGATCCCTCAGGAAATAAGGCAGTGGATGTGTGCAATGATGAAATGAAAGACAGTGAGCTCAGTCCGAGACTAACAAATTTCCTCAAAACTGGTGTTGTACCAGAATCTCCTGATGATAGAGGTCAATCAAGAACCATTTTTCCCATTCCAGACTGTGCTTCACCTGTTCATCTGCGTGACAATATTATAGGTAAATCTACAAGTTCTGGAGATCATGAAGAGATCATTACAGACGATAAGCTCAGTCAAGACAATGTCTCCTCTCCAATCAATAACGAAACAAAGACTCCATTACTTGTGAAGAACTGTGCAAACATAAGAAGGCGAATCTTAATATCTCCATCTACTGAGGAAGGCCACACTCTGTCGATCAATGCAACAGATCATAGCTTCAGCGAAGATTCACACATAAGTTCTGGTGGAAAGGATGACAGTATCAAACCAGTGCGCAAGTTCATAAGATTGCGTAAAGCTGTTAGTTATGGGAACAGGACAAATCAGAGAGACAAAAGGGATTGTTTTGTTTCAACAAGAAAGAATTCCATGCCATGCACTTCCTCTAATACCACACGTAATAAGCGTGGCAGAGGCAAGGTGAAACAATCCAATGATGTCTATATAAGAGACTTCATCGAGGAAGAGGCTGAAGTATCTTCAGATGCTGATGTGTCTGACGATGAAGTGGAGGATGAGCAAAATTCATACGATAGTTTCATAGATGACAGGATTAATCCTACAGCCATGAATAGTCAATCTGAGCCTAGAATGGACATGATGAATGTGTACAGGCGTTCTTTACTCAGTCAATCACCAATGGAGAGACTGCAAAGTTCTACAACTCCTGAGTTGGCTTCCATGTCCAAAATCAGTGAACATGGTAGTTCTCCCATCAAGATGTCCGTTTCAAGTTCTTTCCTGTTGCCTCAAAACAATAATTCCATCAATATGTCAGATTATGTCCAAATTGATCAGATTTCTTCAGAAGTCGTACCGTGTGCTGCAAGAGAAGTTTCTCACAACAAGGAAAAAGAGATTGTATTCAAAAAAAGAAAGTTGAGCTTGTGTCATTCAGAATCCCTGCCAAAAGTAAACTTGGAAACGGCGTTTGCGCTTCAATCAGGCAAGGAACTACTGCATGATAATGCAAACGAAGATGCCTTCTCTGATGATTTCTACGATGGCATTGACCTTGATGCAATTGAGGCACAGGCCACATTGCTTTTGAAACAGAAATCAAATTTGACTACTCAAACTCAATCTTGCCAGCTTAATGTAAATAACGTGGACTCTCCATCGTTTGATCTTGGAATATGA | 3837 | 0.4173 | MTSSAAPHHVIDDDDDEFDWEAAVMEIDVACRNTKPSTSTSASCSSKFAPSIHRSVSDIPITSDIKKNFPKASRQSTLDNFVAKKGPLPQPSAPPTTSPKGLEAEDRNCSGSDESLGCTDIDADAAKTWIYPVNVPLRDYQLAITKSALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPNGKIVFAAPSRPLVMQQIEACHNIVGIPQKWTIDMTGQLNPKSRAIFWKTKRVFYVTPQVLENDIHSGICLAKYLVCLVIDEAHRAMGNYSYCVAVRELMTIPVQLRILALTATPGSKQETIQQVIDNLKISVLEYRSESDLDVIPYVHDRKLQLVQVAMGREAVEIDNKILQVIRPMTARLSAIGVLQNRDYNTLSPCELLKIREKFREAPPPDLPHVKCGEVEGYFGVLISLYYIRKILSSHGIRPAYEMLEDKLSQGAFARFMSKNGDIWNAKLLMQQSLGHGASSPKLSKMSEVLLEHFENHDPKSSRVIIFSNYRGSVRDIMDALKDLGESIRAAQFIGQSSGKAMKGQSQKIQQAVLEKFRSGGYNIIVATSIGEEGLDIMEVDLVICFDANISPLRMIQRMGRTGRKHDGRVDILTCEGPELKGYLRKQAKSKTIRKHMRNGGTNSFNFHLSPRMVPHVFKPDVQFVELTIEQFIPRGKQVKEDQDSEVPAFRDKLSVAETNVVERYFLPTGGNARKTSLIAFPYYQTFPSRVHTVPHSNRTMMLIDAMQILQRPSLSDLKASSLENGKVLISTAPLLKLNEKSHSRGTRGSSGVSPLEQIMLSKDAGKERDSPAKCVMNCTSLSSRLHNLGEQKGKTCEGEDVPSNLIMASEMPDPSGNKAVDVCNDEMKDSELSPRLTNFLKTGVVPESPDDRGQSRTIFPIPDCASPVHLRDNIIGKSTSSGDHEEIITDDKLSQDNVSSPINNETKTPLLVKNCANIRRRILISPSTEEGHTLSINATDHSFSEDSHISSGGKDDSIKPVRKFIRLRKAVSYGNRTNQRDKRDCFVSTRKNSMPCTSSNTTRNKRGRGKVKQSNDVYIRDFIEEEAEVSSDADVSDDEVEDEQNSYDSFIDDRINPTAMNSQSEPRMDMMNVYRRSLLSQSPMERLQSSTTPELASMSKISEHGSSPIKMSVSSSFLLPQNNNSINMSDYVQIDQISSEVVPCAAREVSHNKEKEIVFKKRKLSLCHSESLPKVNLETAFALQSGKELLHDNANEDAFSDDFYDGIDLDAIEAQATLLLKQKSNLTTQTQSCQLNVNNVDSPSFDLGI* | 1279 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte1g00850 | 1278 | Pfam | Type III restriction enzyme, res subunit | 150 | 294 | IPR006935 | GO:0003677|GO:0005524|GO:0016787 | |
Pte1g00850 | 1278 | CDD | DEXDc_FANCM | 135 | 316 | IPR044749 | GO:0005524 | |
Pte1g00850 | 1278 | Pfam | Helicase conserved C-terminal domain | 482 | 593 | IPR001650 | - | |
Pte1g00850 | 1278 | SMART | ultradead3 | 133 | 324 | IPR014001 | - | |
Pte1g00850 | 1278 | MobiDBLite | consensus disorder prediction | 82 | 113 | - | - | |
Pte1g00850 | 1278 | Gene3D | - | 460 | 628 | IPR027417 | - | |
Pte1g00850 | 1278 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 144 | 312 | IPR014001 | - | |
Pte1g00850 | 1278 | FunFam | Fanconi anemia, complementation group M | 132 | 327 | - | - | |
Pte1g00850 | 1278 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 180 | 605 | IPR027417 | - | |
Pte1g00850 | 1278 | MobiDBLite | consensus disorder prediction | 1019 | 1042 | - | - | |
Pte1g00850 | 1278 | CDD | SF2_C_FANCM_Hef | 468 | 601 | - | - | |
Pte1g00850 | 1278 | FunFam | ATP-dependent RNA helicase, putative | 458 | 628 | - | - | |
Pte1g00850 | 1278 | SMART | helicmild6 | 503 | 594 | IPR001650 | - | |
Pte1g00850 | 1278 | Gene3D | - | 133 | 327 | IPR027417 | - | |
Pte1g00850 | 1278 | PANTHER | FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER | 3 | 1259 | - | - | |
Pte1g00850 | 1278 | MobiDBLite | consensus disorder prediction | 1019 | 1033 | - | - | |
Pte1g00850 | 1278 | CDD | FANCM_ID | 344 | 437 | IPR039686 | GO:0006281|GO:0043138 | |
Pte1g00850 | 1278 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 473 | 641 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte1g00850 | Pte-Chr1 | 15845730 | 15858464 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte1g00850 | 493 | 592 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 27.000 | 8.02e-06 | 48.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte1g00850 | K10896 | - | rvl:131307412 | 1160.98 |