Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00850 ATGACCTCGTCAGCTGCCCCCCATCATGTTATTGACGACGACGACGACGAGTTCGACTGGGAAGCAGCTGTTATGGAAATCGATGTAGCTTGCCGGAACACAAAGCCTTCCACTTCTACTTCCGCCTCTTGCTCTTCCAAGTTTGCCCCTTCGATTCATCGTTCAGTTTCTGACATACCCATTACTTCAGACATAAAAAAAAACTTCCCCAAGGCTTCTAGGCAGTCTACATTGGACAACTTCGTAGCTAAGAAGGGCCCGTTGCCGCAACCTTCAGCTCCGCCAACCACATCTCCAAAGGGTCTTGAAGCAGAGGATCGGAATTGCAGTGGAAGCGATGAAAGCCTTGGTTGTACTGACATTGATGCTGATGCAGCCAAAACTTGGATATACCCAGTTAATGTTCCCCTCCGTGATTATCAACTTGCCATAACCAAGTCAGCATTATTCTCGAACACATTGGTAGCATTGCCAACAGGACTCGGAAAAACACTTATCGCTGCTGTTGTTATGTATAACTATTTCAGATGGTTCCCCAATGGGAAAATAGTCTTTGCTGCTCCTTCTCGACCACTTGTCATGCAACAAATAGAAGCCTGCCATAATATTGTTGGAATACCGCAGAAATGGACAATTGATATGACTGGCCAACTGAATCCTAAAAGTAGAGCGATCTTTTGGAAAACAAAACGTGTTTTCTATGTAACTCCACAAGTTCTGGAGAATGACATCCACTCAGGTATATGCTTGGCAAAATATTTGGTTTGCTTGGTGATTGATGAAGCTCACAGAGCAATGGGAAATTATTCCTATTGTGTTGCAGTTCGTGAGTTGATGACCATACCGGTGCAGCTGAGAATATTAGCTTTAACAGCAACACCAGGATCAAAGCAGGAGACAATACAACAAGTTATTGATAATTTGAAAATCTCAGTACTTGAATATCGCAGTGAAAGTGATCTTGATGTCATCCCATATGTTCATGACCGGAAGCTACAGTTAGTTCAGGTTGCGATGGGCCGAGAAGCTGTGGAGATAGATAATAAGATCTTGCAAGTAATTCGTCCGATGACAGCTAGACTTTCTGCTATCGGTGTTCTTCAAAACAGAGACTATAACACTCTGAGTCCTTGTGAATTGCTTAAGATAAGGGAAAAATTTCGTGAAGCACCTCCTCCAGACCTTCCTCATGTCAAGTGTGGTGAAGTGGAAGGCTATTTTGGAGTTTTAATCTCTCTTTACTACATTCGTAAGATACTTTCAAGCCATGGGATAAGGCCGGCATATGAAATGCTTGAAGATAAGTTAAGTCAAGGGGCTTTTGCCCGATTCATGAGCAAAAATGGAGATATTTGGAATGCAAAACTCTTAATGCAGCAGAGCTTGGGACATGGAGCATCGAGTCCCAAGTTGTCCAAAATGTCAGAAGTACTGCTCGAACATTTCGAAAACCATGATCCAAAAAGCTCAAGAGTTATCATTTTCTCCAACTATAGAGGAAGTGTCAGGGATATAATGGATGCACTAAAAGACCTTGGTGAGTCCATCAGAGCTGCCCAGTTCATAGGCCAAAGTTCAGGGAAAGCAATGAAGGGTCAATCACAAAAGATACAACAGGCTGTTTTGGAGAAATTCCGATCTGGTGGATACAACATCATTGTGGCTACGTCTATTGGTGAAGAAGGCCTTGATATCATGGAGGTTGATTTAGTCATATGCTTTGATGCTAATATATCGCCTCTGAGAATGATACAACGCATGGGGAGAACTGGGAGGAAGCATGATGGCCGAGTTGATATCCTTACATGTGAAGGGCCAGAGTTGAAAGGTTACTTGCGTAAGCAAGCAAAAAGTAAGACTATAAGGAAGCATATGAGAAATGGAGGAACAAATAGCTTCAATTTTCATTTGAGCCCAAGGATGGTTCCCCATGTCTTTAAACCAGATGTTCAATTTGTTGAACTGACAATTGAGCAATTCATCCCCCGTGGAAAGCAAGTAAAAGAGGATCAGGATTCTGAGGTTCCAGCTTTTAGGGACAAACTTTCTGTTGCTGAAACTAATGTGGTTGAAAGATATTTTCTCCCCACTGGTGGAAATGCAAGGAAAACATCTCTTATTGCTTTTCCATACTATCAGACATTCCCTTCCAGAGTGCATACAGTACCACACTCAAATAGAACAATGATGTTGATAGATGCTATGCAAATTCTGCAAAGACCGTCACTTTCAGATCTCAAAGCTTCCTCTTTAGAGAATGGAAAGGTCCTAATTTCCACTGCCCCTTTGCTAAAATTGAATGAAAAATCACACTCCAGAGGAACACGAGGAAGCTCTGGGGTTTCACCTTTGGAACAAATTATGCTATCAAAGGATGCAGGGAAAGAACGAGATTCTCCAGCCAAATGCGTTATGAACTGCACTTCTCTCTCATCTAGATTACACAATTTAGGTGAACAGAAAGGGAAAACTTGTGAGGGTGAAGATGTTCCCTCTAACCTGATTATGGCTAGTGAGATGCCTGATCCCTCAGGAAATAAGGCAGTGGATGTGTGCAATGATGAAATGAAAGACAGTGAGCTCAGTCCGAGACTAACAAATTTCCTCAAAACTGGTGTTGTACCAGAATCTCCTGATGATAGAGGTCAATCAAGAACCATTTTTCCCATTCCAGACTGTGCTTCACCTGTTCATCTGCGTGACAATATTATAGGTAAATCTACAAGTTCTGGAGATCATGAAGAGATCATTACAGACGATAAGCTCAGTCAAGACAATGTCTCCTCTCCAATCAATAACGAAACAAAGACTCCATTACTTGTGAAGAACTGTGCAAACATAAGAAGGCGAATCTTAATATCTCCATCTACTGAGGAAGGCCACACTCTGTCGATCAATGCAACAGATCATAGCTTCAGCGAAGATTCACACATAAGTTCTGGTGGAAAGGATGACAGTATCAAACCAGTGCGCAAGTTCATAAGATTGCGTAAAGCTGTTAGTTATGGGAACAGGACAAATCAGAGAGACAAAAGGGATTGTTTTGTTTCAACAAGAAAGAATTCCATGCCATGCACTTCCTCTAATACCACACGTAATAAGCGTGGCAGAGGCAAGGTGAAACAATCCAATGATGTCTATATAAGAGACTTCATCGAGGAAGAGGCTGAAGTATCTTCAGATGCTGATGTGTCTGACGATGAAGTGGAGGATGAGCAAAATTCATACGATAGTTTCATAGATGACAGGATTAATCCTACAGCCATGAATAGTCAATCTGAGCCTAGAATGGACATGATGAATGTGTACAGGCGTTCTTTACTCAGTCAATCACCAATGGAGAGACTGCAAAGTTCTACAACTCCTGAGTTGGCTTCCATGTCCAAAATCAGTGAACATGGTAGTTCTCCCATCAAGATGTCCGTTTCAAGTTCTTTCCTGTTGCCTCAAAACAATAATTCCATCAATATGTCAGATTATGTCCAAATTGATCAGATTTCTTCAGAAGTCGTACCGTGTGCTGCAAGAGAAGTTTCTCACAACAAGGAAAAAGAGATTGTATTCAAAAAAAGAAAGTTGAGCTTGTGTCATTCAGAATCCCTGCCAAAAGTAAACTTGGAAACGGCGTTTGCGCTTCAATCAGGCAAGGAACTACTGCATGATAATGCAAACGAAGATGCCTTCTCTGATGATTTCTACGATGGCATTGACCTTGATGCAATTGAGGCACAGGCCACATTGCTTTTGAAACAGAAATCAAATTTGACTACTCAAACTCAATCTTGCCAGCTTAATGTAAATAACGTGGACTCTCCATCGTTTGATCTTGGAATATGA 3837 0.4173 MTSSAAPHHVIDDDDDEFDWEAAVMEIDVACRNTKPSTSTSASCSSKFAPSIHRSVSDIPITSDIKKNFPKASRQSTLDNFVAKKGPLPQPSAPPTTSPKGLEAEDRNCSGSDESLGCTDIDADAAKTWIYPVNVPLRDYQLAITKSALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPNGKIVFAAPSRPLVMQQIEACHNIVGIPQKWTIDMTGQLNPKSRAIFWKTKRVFYVTPQVLENDIHSGICLAKYLVCLVIDEAHRAMGNYSYCVAVRELMTIPVQLRILALTATPGSKQETIQQVIDNLKISVLEYRSESDLDVIPYVHDRKLQLVQVAMGREAVEIDNKILQVIRPMTARLSAIGVLQNRDYNTLSPCELLKIREKFREAPPPDLPHVKCGEVEGYFGVLISLYYIRKILSSHGIRPAYEMLEDKLSQGAFARFMSKNGDIWNAKLLMQQSLGHGASSPKLSKMSEVLLEHFENHDPKSSRVIIFSNYRGSVRDIMDALKDLGESIRAAQFIGQSSGKAMKGQSQKIQQAVLEKFRSGGYNIIVATSIGEEGLDIMEVDLVICFDANISPLRMIQRMGRTGRKHDGRVDILTCEGPELKGYLRKQAKSKTIRKHMRNGGTNSFNFHLSPRMVPHVFKPDVQFVELTIEQFIPRGKQVKEDQDSEVPAFRDKLSVAETNVVERYFLPTGGNARKTSLIAFPYYQTFPSRVHTVPHSNRTMMLIDAMQILQRPSLSDLKASSLENGKVLISTAPLLKLNEKSHSRGTRGSSGVSPLEQIMLSKDAGKERDSPAKCVMNCTSLSSRLHNLGEQKGKTCEGEDVPSNLIMASEMPDPSGNKAVDVCNDEMKDSELSPRLTNFLKTGVVPESPDDRGQSRTIFPIPDCASPVHLRDNIIGKSTSSGDHEEIITDDKLSQDNVSSPINNETKTPLLVKNCANIRRRILISPSTEEGHTLSINATDHSFSEDSHISSGGKDDSIKPVRKFIRLRKAVSYGNRTNQRDKRDCFVSTRKNSMPCTSSNTTRNKRGRGKVKQSNDVYIRDFIEEEAEVSSDADVSDDEVEDEQNSYDSFIDDRINPTAMNSQSEPRMDMMNVYRRSLLSQSPMERLQSSTTPELASMSKISEHGSSPIKMSVSSSFLLPQNNNSINMSDYVQIDQISSEVVPCAAREVSHNKEKEIVFKKRKLSLCHSESLPKVNLETAFALQSGKELLHDNANEDAFSDDFYDGIDLDAIEAQATLLLKQKSNLTTQTQSCQLNVNNVDSPSFDLGI* 1279
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00850 1278 Pfam Type III restriction enzyme, res subunit 150 294 IPR006935 GO:0003677|GO:0005524|GO:0016787
Pte1g00850 1278 CDD DEXDc_FANCM 135 316 IPR044749 GO:0005524
Pte1g00850 1278 Pfam Helicase conserved C-terminal domain 482 593 IPR001650 -
Pte1g00850 1278 SMART ultradead3 133 324 IPR014001 -
Pte1g00850 1278 MobiDBLite consensus disorder prediction 82 113 - -
Pte1g00850 1278 Gene3D - 460 628 IPR027417 -
Pte1g00850 1278 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 312 IPR014001 -
Pte1g00850 1278 FunFam Fanconi anemia, complementation group M 132 327 - -
Pte1g00850 1278 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 605 IPR027417 -
Pte1g00850 1278 MobiDBLite consensus disorder prediction 1019 1042 - -
Pte1g00850 1278 CDD SF2_C_FANCM_Hef 468 601 - -
Pte1g00850 1278 FunFam ATP-dependent RNA helicase, putative 458 628 - -
Pte1g00850 1278 SMART helicmild6 503 594 IPR001650 -
Pte1g00850 1278 Gene3D - 133 327 IPR027417 -
Pte1g00850 1278 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 3 1259 - -
Pte1g00850 1278 MobiDBLite consensus disorder prediction 1019 1033 - -
Pte1g00850 1278 CDD FANCM_ID 344 437 IPR039686 GO:0006281|GO:0043138
Pte1g00850 1278 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 473 641 IPR001650 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pte1g00850 Pte-Chr1 15845730 15858464 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00850 493 592 Eukaryotic Initiation Factors Gene Family AT1G72730 27.000 8.02e-06 48.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00850 K10896 - rvl:131307412 1160.98