Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00845 ATGGGGAGAGGAAAGATTGAGATCAAGAGGATTGAGAACACTACTAACCGCCAAGTCACCTTCTGCAAACGTAGGAATGGGCTGCTGAAGAAAGCTTATGAACTATCAGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAGTACTCTAACAACAACAGCATAAGATCAACTATCGAGAGGTACAAGAAGGCATGCCCAGATGGATCAAGCACCAGCTCTCTTACTGAAATGAATACTCAATTTTATCAGCAAGAGTCAGCGAAGCTGAGGCAGCAGATACAAATGCTGCAAAACTCTAACAGACACTTGATGGGAGATTCCTTGAGTAACTTGAGCGTGAAGGAACTAAAGCAGCTGGAAAATAGGCTTGAGAGAGGAATCGGTAGAATAAGGTCCAAGAAGCATGAGATGCTTCTGGCAGAAATTGAGTATTTGCAGAAAAGGGAAATGGAACTGGAAAACGATAATCTTTGCCTGAGGACAAAGATAGCAGAAATTGAGAGGTTTCAGGAAGCACATATAGTTTCTGGACAAGAGCTCAGTGCCATTCAGGCATTTGCTTCTCGCAATTTCTTTAGTCCAGCTATGATTGATGATGGAGGTGCCTATCCCCAACCAGACAAGAAGATGCTACATCTTGGGTACATATATATACTGCCCTTTTCTTATATATTCACAATTTTTTTTTAA 717 0.4198 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNSIRSTIERYKKACPDGSSTSSLTEMNTQFYQQESAKLRQQIQMLQNSNRHLMGDSLSNLSVKELKQLENRLERGIGRIRSKKHEMLLAEIEYLQKREMELENDNLCLRTKIAEIERFQEAHIVSGQELSAIQAFASRNFFSPAMIDDGGAYPQPDKKMLHLGYIYILPFSYIFTIFF* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00845 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte1g00845 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte1g00845 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte1g00845 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte1g00845 238 Coils Coil 88 108 - -
Pte1g00845 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 159 - -
Pte1g00845 238 Gene3D - 13 121 IPR036879 GO:0003677|GO:0046983
Pte1g00845 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte1g00845 238 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Pte1g00845 238 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte1g00845 238 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte1g00845 238 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte1g00845 238 Coils Coil 125 164 - -
Pte1g00845 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte1g00845 238 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Pte1g00845 238 FunFam agamous-like MADS-box protein AGL11 13 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00845 Pte-Chr1 15632169 15637567 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00845 1 223 MADS-box Gene Family AT4G09960 72.727 2.55e-118 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte1g00845 K-box 1.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00845 K09264 - tcc:18593065 372.474