Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00842 ATGGCCCGTGGAAAGATTCAGCTGAAGCGTATTGAGAACCCTGTGCACAGGCAAATCACCTTCTGCAAGCGCCGATCAGGGCTTCTGAAGAAGGCCAAGGAGCTCTCCATACTTTGTGATGCAGAAATTGGAGTTTTCGTTTTTTCTGCTCATGGAAAGCTCTATGAGCTGGCCACCAACGGGACCATGCAAGGGCTTATTGAGAGGTACTTGAGGTACACAGGAGGTCAGCCTGAGCCAACCAATGTAACACTTCAACCGGATCCAAAAGAGGAAGTGAAAATGCTAAAACAGGAGATTGAGACACTGCAAAAAGGTCTAAGGTATATGTTTGGAGAGGGAATTGGAACTATGAACATCGAGGAGTTACAAGCACTCGAAAAACAACTTGAAGAGTGGATTTATCATATTCGATCAATGAAGATGAACTTTATGCTAAGGGAAATTCAAACTTTGAGGGATAAGGAGGAAATGCTTCAAGCAGCGAACCAGTGTCTCCAAGACAAGATTGCGAACGCTGGAATGACTAACATTGGTGCCGCTAACATGTTCCCACTAACCATAGAAGATGACATATTTCAGTTCTAG 588 0.4439 MARGKIQLKRIENPVHRQITFCKRRSGLLKKAKELSILCDAEIGVFVFSAHGKLYELATNGTMQGLIERYLRYTGGQPEPTNVTLQPDPKEEVKMLKQEIETLQKGLRYMFGEGIGTMNIEELQALEKQLEEWIYHIRSMKMNFMLREIQTLRDKEEMLQAANQCLQDKIANAGMTNIGAANMFPLTIEDDIFQF* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00842 195 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte1g00842 195 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte1g00842 195 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte1g00842 195 Gene3D - 15 77 IPR036879 GO:0003677|GO:0046983
Pte1g00842 195 Pfam K-box region 89 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte1g00842 195 Coils Coil 142 169 - -
Pte1g00842 195 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte1g00842 195 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte1g00842 195 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Pte1g00842 195 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Pte1g00842 195 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pte1g00842 195 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 144 - -
Pte1g00842 195 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00842 Pte-Chr1 15454394 15462845 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00842 1 196 MADS-box Gene Family AT1G71692 59.434 2.98e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte1g00842 K-box 5.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00842 - - qsu:112017718 257.299