Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00835 ATGGGGTGCATTTGTTCAAAAGACAGCTCAGACAAAGTGGATGACTGTGCAAAACAACAAGACATTAACAAGTCTTCTGTACAAGTCATTGCTCCTTCCTCAAAAAGAGATGATATTAGAATACCAGACTCGGTGAGTGGTTGTATGGATGGCAAATCATCATCACACGCTAATTTGGTGGATGATCTCATGGATAAGAGAGATATCATTGTGGAAAGGCCTAAAACAAGCAACCATCCTTATCACAAAAGATGGTCCACCATGGATTTGAGTGTTCCAGGAGGAAAGGCAGATATGTCGAAAACTAAGCTGACTGGTGCAGCTGATGAATGGCCTTCATGGCTAACTTCAGTTGCACCAGAAGCCGTCCAGGGCTGGACACCCCGTCGTGCAGATTCCTTCGAGAAGCTAAACAAAATTGGACAAGGAACTTACAGCACTGTTTATAAGGCTCGTGACCTTAAGACTAACAAAATTGTGGCACTGAAGAAGGTTCGTTTTGTCAATATGGATCAAGAAAGCGTGCGTTTTATGGCCAGGGAAATCCACATTCTGCGTAAACTAGACCATCCAAATGTGATGAAGCTCGAGGGTATTGTCACATCAAGGATATCAGACAGCTTGTATCTCGTATTTGAGTACATGGAACATGATCTTGCTGGGTTGGCTGCAAGACCTGGTGTGAAATTCACTGAATCACAGATCAAATGCTATATGCAACAATTACTTCGTGGACTTGAACACTGTCACAATCGCGGTATACTCCACCGGGACATCAAGGGTTCGAATCTTTTGATAGACAACAATGGAGTTCTGAAGATAGGAGATTTTGGTTTGGCAGCGTGTTATGACCCCAGTGGGAAGCAGGCCTTAACCAGTCGCGTAGTAACACTGTGGTATAGGGCACCGGAGCTTTTGCTTGGGTCTACAGATTACGGACCTGCAATTGACATGTGGAGTGCCGGTTGCATCCTTGCTGAGCTGTTTGCTGGGAAGCCTATCATGCCAGGAAGAACAGAGGTGGAGCAAATGCACAAGATTTTCAAGCTGTGTGGTTCTCCATCTCCATCTGATGACTACTGGCAGAAAGCTAGATTTCCACATGCAACAAGTTTTAAACCACAAAACACTTACGAGTGTCGTATTTCTGAGACATTTAGAGACTTTCCTTCTACGTCTCTTGCTCTTACTGAGAAGCTTCTTGCAATTGAACCAAATGACCGAGGTTCTGCAACTTCTGCATTGCATAGTGAGTTCTTCACTACAAATCCCCTCCCTTGCGATCCATCAAATTTACCAAAATATCCTCCGAGCAAGGAATACGAAGTTAAGGTTCGAAATGAGGATAACAGAGGAAAGGAAGAAAATGTGAAAGGCCGTGGTCCTGTCTCAGTTGTAAGGTGCACAATAAATACAAAGGCATTGCCAACTCCAGAATTTAATACTCAGAGAGATATCGTTATGCAGGTATGTCTATATAACACAAATGCACAAGGCAATGGCGGAGCAAGCTTTGCTACTGAGGCAAGAGGAATCAATGGAGGCTACATTCATTCAACTTCTATGATACATCCTGCAGCATCAGGGCCTTCCTGGAATAGGACGACGTCGATGAAAAAGGGCCATGAGGTATCCATACAGAAATCTCAAAAACCCAAAAGAGATGATACGACATCCAGCAAAGAACAACAAACGGGTTATGTGCCAAAGAAAAATAGGATTCACTACTCAGGACCACTGGTACCTCCTGGAGGTAACATGGATGACATGCTGAAAGAGCATGAGAAACTCATGCAAGAGGCGTTTCGTAACGCTCGAGTGGACAGGAGACCAGCCAACCGATAA 1845 0.4417 MGCICSKDSSDKVDDCAKQQDINKSSVQVIAPSSKRDDIRIPDSVSGCMDGKSSSHANLVDDLMDKRDIIVERPKTSNHPYHKRWSTMDLSVPGGKADMSKTKLTGAADEWPSWLTSVAPEAVQGWTPRRADSFEKLNKIGQGTYSTVYKARDLKTNKIVALKKVRFVNMDQESVRFMAREIHILRKLDHPNVMKLEGIVTSRISDSLYLVFEYMEHDLAGLAARPGVKFTESQIKCYMQQLLRGLEHCHNRGILHRDIKGSNLLIDNNGVLKIGDFGLAACYDPSGKQALTSRVVTLWYRAPELLLGSTDYGPAIDMWSAGCILAELFAGKPIMPGRTEVEQMHKIFKLCGSPSPSDDYWQKARFPHATSFKPQNTYECRISETFRDFPSTSLALTEKLLAIEPNDRGSATSALHSEFFTTNPLPCDPSNLPKYPPSKEYEVKVRNEDNRGKEENVKGRGPVSVVRCTINTKALPTPEFNTQRDIVMQVCLYNTNAQGNGGASFATEARGINGGYIHSTSMIHPAASGPSWNRTTSMKKGHEVSIQKSQKPKRDDTTSSKEQQTGYVPKKNRIHYSGPLVPPGGNMDDMLKEHEKLMQEAFRNARVDRRPANR* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00835 614 SMART serkin_6 134 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte1g00835 614 FunFam probable serine/threonine-protein kinase At1g54610 121 216 - -
Pte1g00835 614 MobiDBLite consensus disorder prediction 527 543 - -
Pte1g00835 614 PANTHER CELL DIVISION PROTEIN KINASE 132 426 - -
Pte1g00835 614 Gene3D Transferase(Phosphotransferase) domain 1 217 459 - -
Pte1g00835 614 MobiDBLite consensus disorder prediction 544 560 - -
Pte1g00835 614 ProSitePatterns Protein kinases ATP-binding region signature. 140 163 IPR017441 GO:0005524
Pte1g00835 614 Pfam Protein kinase domain 134 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte1g00835 614 Gene3D Phosphorylase Kinase; domain 1 121 216 - -
Pte1g00835 614 ProSiteProfiles Protein kinase domain profile. 134 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte1g00835 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Pte1g00835 614 SUPERFAMILY Protein kinase-like (PK-like) 127 428 IPR011009 -
Pte1g00835 614 MobiDBLite consensus disorder prediction 527 589 - -
Pte1g00835 614 FunFam probable serine/threonine-protein kinase At1g54610 217 460 - -
Pte1g00835 614 CDD STKc_CDK9_like 134 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00835 Pte-Chr1 15152688 15155627 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00835 126 458 Core Cell Cycle Gene Families AT5G10270 52.137 1.67e-117 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pte1g00835 Pkinase 6.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00835 K08819 - qsu:112006540 744.191