Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00813 ATGTCTGGGTTCAATAGCACTTTAGATTTCAATGATTTTGCTTTTTTAGATTCAAACCAATTCCTTCTCAGCGATGAAACATTTGGTGACATTACTATGTTATTACAGACAACATCTCCTTGCATTGAATCCGTGATCAATTGCACAACGACTGCTGCGAGCTCTTCAGAGGGTTATGTACATGGCAATGGTACAGTGGAGGTACCTAACCAAGTAAGCATGAGCACCATTGACAATGTGGCACACCATTCAGTTCAGCCTGTGGCGGGACAGCAATCATATACACCGAGAATATACCGGAGTTATAAAGGCGTGAGGCGTAGGCCATGGGGGAAATACGCGGCAGAGATCCGAGATCCAGCGAAGAATGGAGCTAGGGTTTGGCTTGGGACGTACGAAACTGCTGAGCTTGCTGCATTAGCTTATGATAGAGCTGCATTCAAGCTACGTGGGGCAAAGGCAAAGCTTAATTTTCCTCACCTTGCCGGCTCTGATGTGCCCGAGCTAAGTAGGGTGAGAAGAAAGCATTCATAA 534 0.4588 MSGFNSTLDFNDFAFLDSNQFLLSDETFGDITMLLQTTSPCIESVINCTTTAASSSEGYVHGNGTVEVPNQVSMSTIDNVAHHSVQPVAGQQSYTPRIYRSYKGVRRRPWGKYAAEIRDPAKNGARVWLGTYETAELAALAYDRAAFKLRGAKAKLNFPHLAGSDVPELSRVRRKHS* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00813 177 CDD AP2 102 161 IPR001471 GO:0003700|GO:0006355
Pte1g00813 177 SMART rav1_2 101 165 IPR001471 GO:0003700|GO:0006355
Pte1g00813 177 FunFam Ethylene-responsive transcription factor 2 100 160 - -
Pte1g00813 177 ProSiteProfiles AP2/ERF domain profile. 101 159 IPR001471 GO:0003700|GO:0006355
Pte1g00813 177 Pfam AP2 domain 102 151 IPR001471 GO:0003700|GO:0006355
Pte1g00813 177 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Pte1g00813 177 PRINTS Ethylene responsive element binding protein signature 141 161 IPR001471 GO:0003700|GO:0006355
Pte1g00813 177 Gene3D AP2/ERF domain 101 160 IPR036955 GO:0003700|GO:0006355
Pte1g00813 177 SUPERFAMILY DNA-binding domain 102 160 IPR016177 GO:0003677
Pte1g00813 177 PANTHER DNA-BINDING DOMAIN 79 160 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00813 Pte-Chr1 14204162 14204806 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00813 102 173 AP2-EREBP Transcription Factor Family AT2G44840 79.167 2.71e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte1g00813 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00813 K09286 - qsa:O6P43_026942 132.494