Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00779 ATGTTGGACTACGAATGGGGCAATCCATCAACCATAATTCTCACCGGGAACGAAGAAGATGAACCAACACACCATGAAGATTCAGACCAAACCCACCGTCAAATTTTCGACCACTACGCTTCTCAATCTAACGCCTTACTTCCTGACCATTTCCTCTCTCACCATCAACCTTCACATAACACCAACCCCACCAACAGTTTCCCTCATCACCATAACCACCACCACCATCATCACTCATTTAACCCTCAAGCTCACAACCCTATTCACCATCCCCTATTTGATCCACGCGCCTTCGCCGGCGCGTCTTCCACCTCTTACCCTCCACCACTGCCACCAGCCCCACAACCCCACAACTCCTTGCTCTCCTTGGACCCACTATTCGTTGTTCCTAAGACTGAGGACTTCGCAGCTAATAGTACCAGTAGCAACCCAAGACTTGGTCTCAACTTAGGTGGCCGTACCTACTTCTCCACCGACGATGACTTTGTGAACCGTCTGTACCGCCGGTCTAGAGCCGTCGAACCCGGTTCATCATCTTCATCCAACCCACCCAAGTGTCAAGCTGAAGGCTGCAATGCCGATCTCTCAAACGCTAAACACTACCATAGAAGACACAAAGTCTGCGAGTTTCACTCTAAGGCTGCTACTGTCATTGCCGCTGGGTTGACTCAGCGATTTTGCCAGCAGTGTAGCAGGATCTCAATCAGACCCAGCTGGGGCTTACTCATCATCGGTGACAGTGGCATTGTCCTCGTCGGATTATGTCCGACCAAGGCCATTTCAAAGCACAAGCGCTTCAACAACAACGAAAACAACAAACTCACCATTTTTCTCAAGTGGGTGCTGAAAAAGACAGCAAATTTTACATTGCCATTGCTGGAGCAAGAAGAACATGGAAAAGCGGACAATTGA 912 0.4934 MLDYEWGNPSTIILTGNEEDEPTHHEDSDQTHRQIFDHYASQSNALLPDHFLSHHQPSHNTNPTNSFPHHHNHHHHHHSFNPQAHNPIHHPLFDPRAFAGASSTSYPPPLPPAPQPHNSLLSLDPLFVVPKTEDFAANSTSSNPRLGLNLGGRTYFSTDDDFVNRLYRRSRAVEPGSSSSSNPPKCQAEGCNADLSNAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRISIRPSWGLLIIGDSGIVLVGLCPTKAISKHKRFNNNENNKLTIFLKWVLKKTANFTLPLLEQEEHGKADN* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00779 303 Pfam SBP domain 186 233 IPR004333 GO:0003677
Pte1g00779 303 MobiDBLite consensus disorder prediction 1 31 - -
Pte1g00779 303 MobiDBLite consensus disorder prediction 53 90 - -
Pte1g00779 303 MobiDBLite consensus disorder prediction 53 67 - -
Pte1g00779 303 ProSiteProfiles Zinc finger SBP-type profile. 183 260 IPR004333 GO:0003677
Pte1g00779 303 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 75 232 IPR044817 GO:0003677
Pte1g00779 303 SUPERFAMILY SBT domain 184 235 IPR036893 GO:0003677|GO:0005634
Pte1g00779 303 MobiDBLite consensus disorder prediction 68 83 - -
Pte1g00779 303 Gene3D - 176 271 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00779 Pte-Chr1 12971268 12973145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00779 1 233 SBP-box Gene Family AT1G02065 46.640 3.74e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte1g00779 SBP 1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00779 - - qsa:O6P43_017357 270.781