Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00760 ATGGAGAAGCATAAGTGTAGGCTTTGCTTCAGAAAATTCTCTAATGGCAGAGCTTTAGGTGGGCATATGAGGTCTCATGTGACGAACCTTTCTCTTCCTCCAAAGCCAGAAGAATCACCATCCCCACCAAAACAAATAAGTGATGGGGTTCTGTCAGTGTCATTTTCTTCATCTTCTGAAGAAGAGGAAGAACAAGAAGGAGAAGCAGACATGAGATTGATTCATGGTCTAAGAGAGAACCACAAGAGAAGCATCCGCACGATAGATCCTGAGTTTGCATTTGCTATCGACGCTGGGTCTGTTGTTCTTCAAGATAGAGAGAGTGAGACCGAGTCATCCAAGAACCCAACGCGGACACGATCCAAAAGGATTGCTAGCAATTCCGTTACTCTGGAAGATGATCGTGAGTATACCCATCGAATTCAACAGCATAACACCATGAAAAAGCGTAGGACTTTGATCAATCCGACAAGTAAAGCTGAATCGTGTGCAGAGCCTGAACCTGCGAGTTCTGTTTCTGATGCTACGACAGAAGAAGATGTCGCATTTTGTCTTATGATGTTGTCGAGAGACAAATGGAAGGGGCACAGAGATCAAGCTGAAGAAGAAAATGATGATGATGATGAGGAGGAGGAGGAAGATGAGGAGGTGAACGAGGACAATGATGTAGCTGAAAGATCCTTTGAATTCAGTGTGAAATTGGACGAGGTGAAACCCGCAAAGAGTAGAGTACGAGGAAAATACAAATGTAAAACATGCAACAAAGTTTTTCGATCTTATGAAGCGTTAGGGGGACATAGAGCAAGTCACAAAAAGACTAAACTTTGTAGAAGAGTGAATAAGCCAGTGCTGAAGCAAGAGAATGCATCAGTTTCAATGGGAGAGAAGAAAATTCATGAATGTCCAGTTTGTTTTAGAATTTTCTCATCAGGGCAAGCATTAGGAGGCCATAAGAGAACCCATGTGATTGGTGCTTCAACAACTACAGCATCAATCAAAAGCTCTACAAAGTTTGAAGACAACATGATAGATCTTAATCTTCCTGCTCCAATTGAAGACGATGAGGTTAGCCAGATTGAACTTTCAGCAGTGTCTGATGCAGGATTTGCGAATCCCATCAGGCAATGA 1128 0.4255 MEKHKCRLCFRKFSNGRALGGHMRSHVTNLSLPPKPEESPSPPKQISDGVLSVSFSSSSEEEEEQEGEADMRLIHGLRENHKRSIRTIDPEFAFAIDAGSVVLQDRESETESSKNPTRTRSKRIASNSVTLEDDREYTHRIQQHNTMKKRRTLINPTSKAESCAEPEPASSVSDATTEEDVAFCLMMLSRDKWKGHRDQAEEENDDDDEEEEEDEEVNEDNDVAERSFEFSVKLDEVKPAKSRVRGKYKCKTCNKVFRSYEALGGHRASHKKTKLCRRVNKPVLKQENASVSMGEKKIHECPVCFRIFSSGQALGGHKRTHVIGASTTTASIKSSTKFEDNMIDLNLPAPIEDDEVSQIELSAVSDAGFANPIRQ* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00760 375 SMART c2h2final6 248 270 IPR013087 -
Pte1g00760 375 SMART c2h2final6 299 321 IPR013087 -
Pte1g00760 375 SMART c2h2final6 4 26 IPR013087 -
Pte1g00760 375 ProSitePatterns Zinc finger C2H2 type domain signature. 250 270 IPR013087 -
Pte1g00760 375 MobiDBLite consensus disorder prediction 20 70 - -
Pte1g00760 375 ProSitePatterns Zinc finger C2H2 type domain signature. 301 321 IPR013087 -
Pte1g00760 375 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 371 IPR044303 GO:0006355
Pte1g00760 375 Gene3D Classic Zinc Finger 245 321 - -
Pte1g00760 375 Pfam C2H2-type zinc finger 4 26 - -
Pte1g00760 375 Pfam C2H2-type zinc finger 248 272 - -
Pte1g00760 375 Pfam C2H2-type zinc finger 299 321 - -
Pte1g00760 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 248 275 IPR013087 -
Pte1g00760 375 MobiDBLite consensus disorder prediction 202 222 - -
Pte1g00760 375 MobiDBLite consensus disorder prediction 143 176 - -
Pte1g00760 375 SUPERFAMILY beta-beta-alpha zinc fingers 248 321 IPR036236 -
Pte1g00760 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Pte1g00760 375 MobiDBLite consensus disorder prediction 194 222 - -
Pte1g00760 375 MobiDBLite consensus disorder prediction 104 125 - -
Pte1g00760 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 299 321 IPR013087 -
Pte1g00760 375 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Pte1g00760 375 Coils Coil 197 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00760 Pte-Chr1 11649329 11650456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00760 1 359 C2H2 Transcription Factor Family AT3G60580 40.385 4.55e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte1g00760 zf-C2H2_6 8.9e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00760 - - qsa:O6P43_017371 399.823