LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte1g00727	ATGGTGAGAGGAAAGACTCAGATGAGGCGCATCGAGAACGCCACAAGCAGGCAAGTGACCTTCTCAAAGAGACGTAATGGGCTTCTGAAGAAGGCTTTTGAGTTATCGGTCCTCTGTGATGCTGAAGTTGCTCTCATTATCTTCTCTGCAAGAGGAAAGCTCCATGAATTTGCAAGCTCCTGTATGCAGGGTACTATTGAACGTTATAGAAGGTATGCCAAAAATACACAGACATATGACGATTCAAATGAACCCAATGTTGAGCATTTGAAGCAAGAAGCTGCTAGCATGATGAAGAAGGTTGAATTGCTTGAAGTTTCAAAAAGTAAATTATTGGGAGAAGGTTTAGGCACCTGCTGCTTCCAAGAACTGCAAAAATTAGAACAACAAATAGAAAATAGCGTAAGCAAAGTTCGTGCAAGAAAGACCCAAGTTTATAAGGAACAAATAGAGAAACTCAAAGAAAAGGAGAAATCTCTAGCAGCTGAGAATGAAAGGCTTCGCGAAAAGATGCCAAAATTATCAAATCAGCACAAACAAAAGACAAGCCATGAAGAGAGCAACCCCAGTTCAGATGTGGAGACTGATTTGTTTATTGGACTACCAGATACAAGACCAAGACGCATGCTAACAAGGAATTGA	642	0.4081	MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSARGKLHEFASSCMQGTIERYRRYAKNTQTYDDSNEPNVEHLKQEAASMMKKVELLEVSKSKLLGEGLGTCCFQELQKLEQQIENSVSKVRARKTQVYKEQIEKLKEKEKSLAAENERLREKMPKLSNQHKQKTSHEESNPSSDVETDLFIGLPDTRPRRMLTRN*	214

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte1g00727	213	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Pte1g00727	213	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Pte1g00727	213	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	184	-	-
	Pte1g00727	213	Pfam	K-box region	84	171	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Pte1g00727	213	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Pte1g00727	213	CDD	MADS_MEF2_like	3	78	IPR033896	GO:0000977\|GO:0045944
	Pte1g00727	213	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Pte1g00727	213	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Pte1g00727	213	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Pte1g00727	213	Coils	Coil	87	107	-	-
	Pte1g00727	213	FunFam	MADS-box transcription factor 1	13	84	-	-
	Pte1g00727	213	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Pte1g00727	213	SUPERFAMILY	SRF-like	3	81	IPR036879	GO:0003677\|GO:0046983
	Pte1g00727	213	Gene3D	-	14	96	IPR036879	GO:0003677\|GO:0046983
	Pte1g00727	213	MobiDBLite	consensus disorder prediction	164	213	-	-
	Pte1g00727	213	Coils	Coil	124	177	-	-
	Pte1g00727	213	MobiDBLite	consensus disorder prediction	164	191	-	-
	Pte1g00727	213	ProSiteProfiles	K-box domain profile.	87	180	IPR002487	GO:0003700\|GO:0005634\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte1g00727	Pte-Chr1	10109723	10114435	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte1g00727	1	158	MADS-box Gene Family	AT2G45660	72.152	1.14e-77	228

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Pte1g00727		K-box	5.9e-26	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte1g00727	-		-	cave:132186361	281.952

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pte1g00727	1	10109723	10114435	Pte1g00727	1	10109723	10114435	RCT