Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00723 ATGAATCCATTAACCTTAGTGAAAAGAATACAGAAAATCAATTCTCGAGAAGCTGCCCTTGGGATAAGCGAGGATGCATCATGGCACGCTAAGTACAAAGATTCTGCATATGTGTTCATTGGAGGCATCCCTTATGATCTCACTGAGGGTGATCTTCTTGCCGTATTCGCACAATATGGTGAAGTTGTTGATGTTAATCTTGTAAGAGACAAAGGTACTGGGAAATCAAAAGGTTTTGCATTCCTTGCATATGAAGATCAAAGAAGCACAACTCTTGCTGTAGATAATTTGAATGGAGCTCAGATTTTGGGACGGATTATTCGTGTGGATCATGTAACCAACTATAAAAAGAAAGAAGAAGAAGATGAAGAAGAACGACAGAGAAAAAGAGAAGAACGTGGTGTGTGCAGGGCTTTCCAAAAGGGTGAATGTACCCGAGGAGCTAGTTGCAAGTTTTCTCACGATGAGCAACGAGCAGCAAACACTGGTTGGGGTGAAGACAATAAAAGTTCTAGATGGGGGCATGACAAATTTAAGGATTCGAAAGATAAAAGATCTGGGTTCAACCAGTCAAACCACGTTCAGAAACATTTGGATAAAGGTTTACCCTCCAGAGCCAGGGGCCATGAAACAAGCTTTGAAGGCCACATCAGGCAAAACACTGGAAGAGAAGAGAAGACAACTAGGAGATACGATGATGAAGAACTTGGTTATAGGGATAGGCATAATGATAAAAGGGAGAATGAGAGAGCTAGAAAGTATGGTAATGCAGAATTGGGTCATAATCCTGAAGATAGTGGAAGGGAAGTAATGAGGTCCAGAAGACAAGAAGGTGATAGTTACAAGTCAAGAGAAGATACTATTTATAGTAGGGAAAGAGTAAGATCGCAAAGACAAGATGATGTTGACCATAGGCCTACAGCAAAGGATGTTTACCGGAAGGAAGAGAAGAAGACATTGAGCAGGCTGGACCGTGATGAAGTTGGAACGACGTGTAGACAAGATTATGATTTTAGGGAGTCAAAAGCTGATCCAGATAAGAAACGAGAGAAAAGGAAGAGTTATGATGACCATGACGATGTGCCAAGGTCAAGAGAAGACCGTGATAGAGGGAAGAGAGAAGGCTAG 1128 0.4167 MNPLTLVKRIQKINSREAALGISEDASWHAKYKDSAYVFIGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTTLAVDNLNGAQILGRIIRVDHVTNYKKKEEEDEEERQRKREERGVCRAFQKGECTRGASCKFSHDEQRAANTGWGEDNKSSRWGHDKFKDSKDKRSGFNQSNHVQKHLDKGLPSRARGHETSFEGHIRQNTGREEKTTRRYDDEELGYRDRHNDKRENERARKYGNAELGHNPEDSGREVMRSRRQEGDSYKSREDTIYSRERVRSQRQDDVDHRPTAKDVYRKEEKKTLSRLDRDEVGTTCRQDYDFRESKADPDKKREKRKSYDDHDDVPRSREDRDRGKREG* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00723 375 SUPERFAMILY RNA-binding domain, RBD 26 117 IPR035979 GO:0003676
Pte1g00723 375 Pfam CCCH-type zinc finger 135 155 IPR041367 -
Pte1g00723 375 CDD RRM_ist3_like 27 115 IPR045844 GO:0000398|GO:0003723
Pte1g00723 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Pte1g00723 375 FunFam Zinc finger CCCH domain-containing protein 25 26 130 - -
Pte1g00723 375 MobiDBLite consensus disorder prediction 198 375 - -
Pte1g00723 375 Coils Coil 112 132 - -
Pte1g00723 375 MobiDBLite consensus disorder prediction 169 190 - -
Pte1g00723 375 SMART rrm1_1 37 110 IPR000504 GO:0003723
Pte1g00723 375 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Pte1g00723 375 Gene3D - 128 200 - -
Pte1g00723 375 MobiDBLite consensus disorder prediction 155 375 - -
Pte1g00723 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Pte1g00723 375 Gene3D - 8 127 IPR012677 -
Pte1g00723 375 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Pte1g00723 375 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 252 - -
Pte1g00723 375 SUPERFAMILY CCCH zinc finger 132 155 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00723 Pte-Chr1 10048803 10053365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00723 38 109 Eukaryotic Initiation Factors Gene Family AT3G16380 31.944 4.47e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00723 K13107 - cave:132163979 382.489