Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00717 ATGAAAGGTGCAAAATCGAAGGCTGATACTATTAAGAATGATACTAGGCTGAAGAGCAAAAGTGCTGGCGTCGGAAAAAGGTCGAAGAAGGCGGCAAAGGATCCAAATAAGCCCAAGAGGCCTCCTAGTGCCTTCTTCGTTTTCATGGAGCAATTCAGAGAACAATTCAAGAAGGAAAATCCAAACAACAAGTCCGTTGCTGCTGTCGGCAAAGCTGCTGGTCAAAAATGGAAGTCAATGTCTGATGCTGAGAAAGCTCCCTATCAAGCAAAAGCTGACAAGAGAAAGCAAGAATTTGATGTATCGATACAGGCCTACAACAAGAGAATGGTTACCAACTAA 342 0.4327 MKGAKSKADTIKNDTRLKSKSAGVGKRSKKAAKDPNKPKRPPSAFFVFMEQFREQFKKENPNNKSVAAVGKAAGQKWKSMSDAEKAPYQAKADKRKQEFDVSIQAYNKRMVTN* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00717 113 MobiDBLite consensus disorder prediction 1 37 - -
Pte1g00717 113 SUPERFAMILY HMG-box 23 108 IPR036910 -
Pte1g00717 113 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 38 107 IPR009071 -
Pte1g00717 113 MobiDBLite consensus disorder prediction 1 42 - -
Pte1g00717 113 Pfam HMG (high mobility group) box 38 107 IPR009071 -
Pte1g00717 113 Gene3D High mobility group box domain 23 113 IPR036910 -
Pte1g00717 113 SMART hmgende2 37 108 IPR009071 -
Pte1g00717 113 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 110 IPR031061 -
Pte1g00717 113 MobiDBLite consensus disorder prediction 73 97 - -
Pte1g00717 113 CDD HMG-box_AtHMGB1-like 39 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00717 Pte-Chr1 9949698 9951455 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pte1g00717 HMG_box 1.4e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00717 K25507 - csv:101203658 169.859