Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00715 ATGAGGTCAATCTTTTGTGGGAACCTGGATTTTGATGCACGGCAGTCCGATGTTGAAAAGCTTTTCAAAAGATATGGAAGGGTCGATAGAGTGGATATGAAGTCTGGTTTTGCCTTTGTGTATATGGAAGATGAGCGTGATGCTGACTATGCAATTCGAAGGCTTGACAGAACTGAATTTGGTAGAAAGGGGCGGCAGTTACGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAAGGGTGGTGATTCAAGGAAACCTCCTGCTAATATGAAGCCTTCCAAAACATTGTTTGTCATAAATTTTGATCCAGTTCATACAAGGACAAGGGACATCGAGAGGCACTTTGATGCGTATGGGAAAATAGCGAACATAAGGATCAGAAGGAACTTTGCATTTGTTCAATATGAAAATCAAGAAGATGCTACTAGGGCTTTAGAGGCTACTAATATGAGCAAGCTCTTGGATCGTGTTATTACTGTTGAGTATGCAATTCGTGATGATGATGATGACAGAAGGAATGGACACAGTCCAGACAGGAGGGGCCGTGACTTGTCCCCAGATGGAAGAGGCTATGGTCGTGGAAGGTCCCCTAGTCCATACCGCAGAAGGGGCAGCCCAGACTATGGCCGTGGATCAAATCCTAGTTCCAGACCTGAAGCAAGAGGAAGTCCCAAGTATGATAGAGTTGAAAGCCCGGTGAATGGTAGATATGACAGTCGTTCACCCCCACCACGAGGTAGATCTCGATCATGA 756 0.4524 MRSIFCGNLDFDARQSDVEKLFKRYGRVDRVDMKSGFAFVYMEDERDADYAIRRLDRTEFGRKGRQLRVEWTKQERDSRKGGDSRKPPANMKPSKTLFVINFDPVHTRTRDIERHFDAYGKIANIRIRRNFAFVQYENQEDATRALEATNMSKLLDRVITVEYAIRDDDDDRRNGHSPDRRGRDLSPDGRGYGRGRSPSPYRRRGSPDYGRGSNPSSRPEARGSPKYDRVESPVNGRYDSRSPPPRGRSRS* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00715 251 MobiDBLite consensus disorder prediction 71 86 - -
Pte1g00715 251 Gene3D - 1 89 IPR012677 -
Pte1g00715 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Pte1g00715 251 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Pte1g00715 251 Gene3D - 90 177 IPR012677 -
Pte1g00715 251 MobiDBLite consensus disorder prediction 71 93 - -
Pte1g00715 251 SUPERFAMILY RNA-binding domain, RBD 2 170 IPR035979 GO:0003676
Pte1g00715 251 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 96 232 - -
Pte1g00715 251 MobiDBLite consensus disorder prediction 168 251 - -
Pte1g00715 251 FunFam Serine/arginine-rich splicing factor RS31 87 178 - -
Pte1g00715 251 SMART rrm1_1 96 162 IPR000504 GO:0003723
Pte1g00715 251 SMART rrm1_1 3 70 IPR000504 GO:0003723
Pte1g00715 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Pte1g00715 251 MobiDBLite consensus disorder prediction 168 190 - -
Pte1g00715 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Pte1g00715 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00715 Pte-Chr1 9935460 9938620 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00715 3 161 Eukaryotic Initiation Factors Gene Family AT4G34110 24.138 2.32e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00715 K12893 - gmx:100797778 399.823