Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00712 ATGAAAGGTGCAAAATCGAAGGCTGATACTATTAAGAATGATACTAGGCTGAAGAGCAAAAGTGCTGGCGTCGGAAAAAGGTCGAAGAAGGCGGCAAAGGATCCAAATAAGCCCAAGAGGCCTCCTAGTGCCTTCTTCGTTTTCATGGAGCAATTCAGAGAACAATTCAAGAAGGAAAATCCAAACAACAAGTCCGTTGCTGCTGTCGGCAAAGCTGCTGGTCAAAAATGGAAGTCAATGTCTGATGCTGAGAAAGCTCCCTATCAAGCAAAAGCTGACAAGAGAAAGCAAGAATTTGATGTATCGATACAGGCCTACAACAAGAGAATGGCCGATGGCAAGAATGGAGATGAGTCGGACAAGTCGAAGTCGGAGGTGCATGATGAAGATGAAGATGCAAGTGAAGAGGAGGATGACGACTAG 423 0.4515 MKGAKSKADTIKNDTRLKSKSAGVGKRSKKAAKDPNKPKRPPSAFFVFMEQFREQFKKENPNNKSVAAVGKAAGQKWKSMSDAEKAPYQAKADKRKQEFDVSIQAYNKRMADGKNGDESDKSKSEVHDEDEDASEEEDDD* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00712 140 MobiDBLite consensus disorder prediction 1 37 - -
Pte1g00712 140 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 38 107 IPR009071 -
Pte1g00712 140 MobiDBLite consensus disorder prediction 87 102 - -
Pte1g00712 140 MobiDBLite consensus disorder prediction 57 140 - -
Pte1g00712 140 SMART hmgende2 37 108 IPR009071 -
Pte1g00712 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 139 IPR031061 -
Pte1g00712 140 SUPERFAMILY HMG-box 23 109 IPR036910 -
Pte1g00712 140 MobiDBLite consensus disorder prediction 1 44 - -
Pte1g00712 140 CDD HMG-box_AtHMGB1-like 39 99 - -
Pte1g00712 140 MobiDBLite consensus disorder prediction 111 128 - -
Pte1g00712 140 Pfam HMG (high mobility group) box 38 107 IPR009071 -
Pte1g00712 140 Gene3D High mobility group box domain 23 106 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00712 Pte-Chr1 9859957 9861908 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pte1g00712 HMG_box 2.4e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00712 K25507 - csv:101203658 186.422