Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00692 ATGGCATTCACAGGAACTCTTGACAAATGCAAGGCTTGTGACAAGACTGTCTATGTTGTCGACATGTTGTCTCTTGAAGGGATTCCTTACCATAAAACCTGCTTCAAGTGTACTCACTGCAAAGGAAATCTGACCATGAATAGCTACTCCTCCATGGATGGAGTCCTCTACTGCAGGCCACATTTTGAGCAGCTCTTCAAAGAATCTGGAAACTTCAGCAAGAATTTCCAGACAGGTAAGCTAACAAACCACAGACTCTCTTCAATGTTCAGTGGAACCCAGGACAAATGTTCAGTTTGCTCAAAAACAGTTTATCCACTGGAAAAGGTGACTCTGGAAGGTGAATGTTTCCACAAGTCCTGCTTTAGGTGTGCTCATGCAGGCTGTCCTCTGACACATTCTTCCTATGCTGCTCTTGATGGTGTCCTCTACTGCAAGCACCATTTTGCTCAACTCTTCATGGAGAAAGGAAACTACAAGCATGTACTCCAGGCTGCTGCAAACAGGAAGAATGCCACGCCACCTCCTGAACCAGCTGACCAGCCAGAGGGAGAGACTGTAGAAGGTGCAGCTGAAGGTGTCGCTGAAAATGCAAAAGGTGGGGATGGGGAAGAAGCTGCAGCGGAAGGTGCAGAAGGTGAAGAGCACAAGTCAGAAGAACAACCTACAGAAGAGCAGTCTTAA 684 0.4678 MAFTGTLDKCKACDKTVYVVDMLSLEGIPYHKTCFKCTHCKGNLTMNSYSSMDGVLYCRPHFEQLFKESGNFSKNFQTGKLTNHRLSSMFSGTQDKCSVCSKTVYPLEKVTLEGECFHKSCFRCAHAGCPLTHSSYAALDGVLYCKHHFAQLFMEKGNYKHVLQAAANRKNATPPPEPADQPEGETVEGAAEGVAENAKGGDGEEAAAEGAEGEEHKSEEQPTEEQS* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00692 227 Gene3D Cysteine Rich Protein 5 72 - -
Pte1g00692 227 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Pte1g00692 227 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 2 35 - -
Pte1g00692 227 ProSiteProfiles LIM domain profile. 95 155 IPR001781 -
Pte1g00692 227 MobiDBLite consensus disorder prediction 198 227 - -
Pte1g00692 227 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 123 162 - -
Pte1g00692 227 Pfam LIM domain 97 152 IPR001781 -
Pte1g00692 227 Pfam LIM domain 10 65 IPR001781 -
Pte1g00692 227 MobiDBLite consensus disorder prediction 167 227 - -
Pte1g00692 227 SMART lim_4 9 61 IPR001781 -
Pte1g00692 227 SMART lim_4 96 148 IPR001781 -
Pte1g00692 227 FunFam LIM domain and actin-binding 1 4 74 - -
Pte1g00692 227 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Pte1g00692 227 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 89 122 - -
Pte1g00692 227 CDD LIM1_SF3 6 68 - -
Pte1g00692 227 PANTHER OS06G0237300 PROTEIN 6 78 - -
Pte1g00692 227 Gene3D Cysteine Rich Protein 91 161 - -
Pte1g00692 227 FunFam LIM domain and actin-binding 1 91 161 - -
Pte1g00692 227 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00692 Pte-Chr1 9320206 9321488 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Pte1g00692 LIM 1.4e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00692 - K09377 qsa:O6P43_027214 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g00692 1 9320206 9321488 Pte1g00692 1 9320206 9321488 RCT