Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte1g00685 | ATGAGCAATAATCGAGCGAGGTACCCACCTGGGATCGGAGTTGGTCCAGGTGGCGGTGTGAACTCCACACCTGCATTTCATTCAAGAAACCCTCAACAGCAGTACGTACAGAGGAATTTTGTTCATAATCAACAGCAATATCAGCAGCAGCAACAACATCATCAAAATTATCAACAGCAACAACAACAGCAACATTGGTTGAGAAGGACTCAGTTGGCTGGTAACGATTCTGGAGTAGTTGACGAGGTTGAGAAGACCGTACAGTCAGAAGCTGTCGACCCAAGCTCGCAAGACTGGAAGGCAAGGTTGAAGATACCACCAACTGATACACGCTACAAGACAGAGGATGTAACAGCGACAAAAGGAAATGAATTTGAGGACTATTTTTTGAAGCGTGAGCTGCTGATGGGCATATATGAGAAGGGTTTTGAGAGACCATCGCCCATTCAGGAAGAGAGTATTCCAATTGCTTTAACTGGTAGTGACATTCTTGCTAGGGCAAAAAATGGAACTGGAAAAACTGCTGCATTCTGCATTCCTGCCTTGGAAAAGATTGATCAGGATAATAATGTTATTCAAGTTGTTATACTTGTTCCAACTCGAGAGCTGGCCCTTCAAACATCTCAAGTATGTAAGGAACTGGGGAAGCATTTGAAAATCCAGGTGATGGTTACAACAGGGGGTACTAGCCTGAAGGATGATATCATGCGTTTATATCAGCCTGTACATTTGCTTGTTGGAACACCAGGAAGGATATTAGATCTTGCAAAGAAAGGTGTCTGTGTTTTGAAAGACTGTAGTATGCTTGTACTGGATGAGGCTGATAAGCTTTTATCTCCGGAGTTCCAACCTTCAGTAGAGCAACTTATTCGCTTTATGCCTGCCAATCGTCAAATTTTGATGTTTTCAGCGACATTTCCTGTTACAGTTAAGGACTTCAAGGATAGATATCTCCAAAAGCCATATGTTATTAACCTTATGGATGAGTTGACTCTAAAGGGTATCACTCAGTATTACGCTTTTGTTGAAGAAAGACAGAAAGTCCACTGCCTGAACACACTTTTCTCTAAGCTGCAAATTAATCAATCAATTATCTTTTGCAACTCGGTAAACCGGGTGGAGCTGTTAGCCAAGAAGATTACAGAACTCGGCTATTCATGTTTCTACATTCATGCTAAGATGTTGCAAGACCATCGTAATAGAGTTTTCCATGACTTCCGTAACGGTGCTTGTAGGAATCTTGTTTGCACAGATCTTTTCACTAGAGGAATAGATATTCAAGCTGTCAACGTTGTTATCAATTTCGATTTTCCTAAGAACTCAGAAACATATTTGCACAGGGTTGGACGTTCTGGAAGGTTTGGTCACCTTGGGTTAGCAGTGAACTTGATAACATATGAGGATCGTTTTAATTTGTATGTTTCTGATGGGTGGGTTTTGAAGTTATATAATTCACGCTTCATGTCTCTGACCTGCTATTGTTTTCTTGTCCGGGTGCAGATATAG | 1506 | 0.4143 | MSNNRARYPPGIGVGPGGGVNSTPAFHSRNPQQQYVQRNFVHNQQQYQQQQQHHQNYQQQQQQQHWLRRTQLAGNDSGVVDEVEKTVQSEAVDPSSQDWKARLKIPPTDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVLDEADKLLSPEFQPSVEQLIRFMPANRQILMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYVSDGWVLKLYNSRFMSLTCYCFLVRVQI* | 502 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte1g00685 | 501 | Gene3D | - | 328 | 476 | IPR027417 | - | |
Pte1g00685 | 501 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 334 | 501 | IPR001650 | - | |
Pte1g00685 | 501 | CDD | SF2_C_DEAD | 335 | 464 | - | - | |
Pte1g00685 | 501 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 154 | 324 | IPR014001 | - | |
Pte1g00685 | 501 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 123 | 151 | IPR014014 | GO:0003724 | |
Pte1g00685 | 501 | Pfam | Helicase conserved C-terminal domain | 349 | 455 | IPR001650 | - | |
Pte1g00685 | 501 | CDD | DEADc_DDX6 | 125 | 325 | - | - | |
Pte1g00685 | 501 | SMART | helicmild6 | 374 | 455 | IPR001650 | - | |
Pte1g00685 | 501 | FunFam | ATP-dependent RNA helicase DDX6 | 104 | 327 | - | - | |
Pte1g00685 | 501 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 | 58 | 472 | - | - | |
Pte1g00685 | 501 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 193 | 472 | IPR027417 | - | |
Pte1g00685 | 501 | Gene3D | - | 83 | 327 | IPR027417 | - | |
Pte1g00685 | 501 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Pte1g00685 | 501 | Pfam | DEAD/DEAH box helicase | 148 | 312 | IPR011545 | GO:0003676|GO:0005524 | |
Pte1g00685 | 501 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 270 | 278 | IPR000629 | - | |
Pte1g00685 | 501 | SMART | ultradead3 | 142 | 338 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte1g00685 | Pte-Chr1 | 9244432 | 9259415 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte1g00685 | 125 | 468 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 38.728 | 3.26e-91 | 282 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte1g00685 | K12614 | - | qsa:O6P43_027218 | 846.654 |