Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00685 ATGAGCAATAATCGAGCGAGGTACCCACCTGGGATCGGAGTTGGTCCAGGTGGCGGTGTGAACTCCACACCTGCATTTCATTCAAGAAACCCTCAACAGCAGTACGTACAGAGGAATTTTGTTCATAATCAACAGCAATATCAGCAGCAGCAACAACATCATCAAAATTATCAACAGCAACAACAACAGCAACATTGGTTGAGAAGGACTCAGTTGGCTGGTAACGATTCTGGAGTAGTTGACGAGGTTGAGAAGACCGTACAGTCAGAAGCTGTCGACCCAAGCTCGCAAGACTGGAAGGCAAGGTTGAAGATACCACCAACTGATACACGCTACAAGACAGAGGATGTAACAGCGACAAAAGGAAATGAATTTGAGGACTATTTTTTGAAGCGTGAGCTGCTGATGGGCATATATGAGAAGGGTTTTGAGAGACCATCGCCCATTCAGGAAGAGAGTATTCCAATTGCTTTAACTGGTAGTGACATTCTTGCTAGGGCAAAAAATGGAACTGGAAAAACTGCTGCATTCTGCATTCCTGCCTTGGAAAAGATTGATCAGGATAATAATGTTATTCAAGTTGTTATACTTGTTCCAACTCGAGAGCTGGCCCTTCAAACATCTCAAGTATGTAAGGAACTGGGGAAGCATTTGAAAATCCAGGTGATGGTTACAACAGGGGGTACTAGCCTGAAGGATGATATCATGCGTTTATATCAGCCTGTACATTTGCTTGTTGGAACACCAGGAAGGATATTAGATCTTGCAAAGAAAGGTGTCTGTGTTTTGAAAGACTGTAGTATGCTTGTACTGGATGAGGCTGATAAGCTTTTATCTCCGGAGTTCCAACCTTCAGTAGAGCAACTTATTCGCTTTATGCCTGCCAATCGTCAAATTTTGATGTTTTCAGCGACATTTCCTGTTACAGTTAAGGACTTCAAGGATAGATATCTCCAAAAGCCATATGTTATTAACCTTATGGATGAGTTGACTCTAAAGGGTATCACTCAGTATTACGCTTTTGTTGAAGAAAGACAGAAAGTCCACTGCCTGAACACACTTTTCTCTAAGCTGCAAATTAATCAATCAATTATCTTTTGCAACTCGGTAAACCGGGTGGAGCTGTTAGCCAAGAAGATTACAGAACTCGGCTATTCATGTTTCTACATTCATGCTAAGATGTTGCAAGACCATCGTAATAGAGTTTTCCATGACTTCCGTAACGGTGCTTGTAGGAATCTTGTTTGCACAGATCTTTTCACTAGAGGAATAGATATTCAAGCTGTCAACGTTGTTATCAATTTCGATTTTCCTAAGAACTCAGAAACATATTTGCACAGGGTTGGACGTTCTGGAAGGTTTGGTCACCTTGGGTTAGCAGTGAACTTGATAACATATGAGGATCGTTTTAATTTGTATGTTTCTGATGGGTGGGTTTTGAAGTTATATAATTCACGCTTCATGTCTCTGACCTGCTATTGTTTTCTTGTCCGGGTGCAGATATAG 1506 0.4143 MSNNRARYPPGIGVGPGGGVNSTPAFHSRNPQQQYVQRNFVHNQQQYQQQQQHHQNYQQQQQQQHWLRRTQLAGNDSGVVDEVEKTVQSEAVDPSSQDWKARLKIPPTDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVLDEADKLLSPEFQPSVEQLIRFMPANRQILMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYVSDGWVLKLYNSRFMSLTCYCFLVRVQI* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00685 501 Gene3D - 328 476 IPR027417 -
Pte1g00685 501 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 334 501 IPR001650 -
Pte1g00685 501 CDD SF2_C_DEAD 335 464 - -
Pte1g00685 501 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 324 IPR014001 -
Pte1g00685 501 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 123 151 IPR014014 GO:0003724
Pte1g00685 501 Pfam Helicase conserved C-terminal domain 349 455 IPR001650 -
Pte1g00685 501 CDD DEADc_DDX6 125 325 - -
Pte1g00685 501 SMART helicmild6 374 455 IPR001650 -
Pte1g00685 501 FunFam ATP-dependent RNA helicase DDX6 104 327 - -
Pte1g00685 501 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 58 472 - -
Pte1g00685 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 472 IPR027417 -
Pte1g00685 501 Gene3D - 83 327 IPR027417 -
Pte1g00685 501 MobiDBLite consensus disorder prediction 1 28 - -
Pte1g00685 501 Pfam DEAD/DEAH box helicase 148 312 IPR011545 GO:0003676|GO:0005524
Pte1g00685 501 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 270 278 IPR000629 -
Pte1g00685 501 SMART ultradead3 142 338 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00685 Pte-Chr1 9244432 9259415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00685 125 468 Eukaryotic Initiation Factors Gene Family AT3G19760 38.728 3.26e-91 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00685 K12614 - qsa:O6P43_027218 846.654