Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00672 ATGGATGGAAATTTGTTAGAAGTCACCTCACGATTGCTGCAAGGAAAATCAAACTCTGAATCTGGACAGCCACACCATGTGCGGTCTCTAACTGCTCCAATACCAAGCAGCAGAAAGTCTGCAGAAGCAAGTTCTGAGGAATCCTGTGGACAATCAAGTGCCAGTCCTTCAGCTTTCTCAACATGCTCCTCTGGTAGTGCTAATGAAGTAATGCAGGACACAAATGCAATTGATGATGGTAGTGATTATATGTTAGGGTTAAGTGCATATCATCAGAGAAAAGTAGACCTTATTTCATCTCCTCCTAGTGTATTGGATAAAAGCATGGACGATTTTCTTTTAGATCAGCTTGAGCAAGCCCGGATTGAAGCTGAGAATGCAAGGATGGAAGTATTTCGACAATCTATTTGGCGTGGAAAAGCTGAAAAAGATGCAGCTGAGGCAATGCGCAGGCTTAAAGTTTCTGAAAACTTTTATGATGTGGAACTCAAACTAAGAAAAGGAGTTGAACAAGCACTAAATAAGGAGAGGGAAGAACTTGAAAAGACAAAGAGACAGCGAGATGTAGTCAAGGAAGAACTCGAGTTCGCCCTAGAACAGAAATCCTCTCTGGAGAGCAAAATAGCTGCATCTGAACGAGTGGTAGAAGAGTTGGAACAGAAGATTATATCTGCTGTGGATCTACTGCAGAATTATAAGAAGGAGCGAGATGAGTTGCAGATACAGCATGATAATGCATTAAGAGAAGCTGTGGAGTTGAAGAAACAAGGAGAGGCTTCATGCAGACATGTACTACAATTCTTTTCTGAATTCTCCTTTTCAGAGATAGCCGAAGCAACAACGAACTTTAACTCTTCCCTTAGGATTGGAGAAGGTGGATATGGAAGTATTTATAGAGGTCGCCTGCGTCATACTGAGGTTGCTATAAAAATGCTCCACTCTAATAGCATGCAAGGTCCGCTAGAGTTTAAACAAGAGGTTGAAGTATTGAGCAAATTGAGGCACCCCAATCTTATCACACTAATTGGAACTTGCCCAGAGTCTTGGACTCTAGTTTACGAGTACCTGCCGAATGGAAGCCTTGAAGATCGTCTTAGCTGTAAAGATAATAGCCCTCCTTTATCTTGGCAAACTCGAATACGCATTGCCACTGAACTTTGCTCTGCTCTTGTTTTTCTTCAGTCATGCAAGCCTCACGGCATTGTGCATGGTGACTTAAAGCCATCCAATATTCTCCTTGATGCTAACTTGGTTACCAAGCTTAGTGATTTCGGAATATGTCGTGTGCTATCCAACCATGAAAATTCAAGTTCTAAAGCAACCACATTTTGGAAAACTGACCCAAAAGGGACTTTTGTGTATCTCGACCCTGAGTTCCTTGCCTCAGGGGAACTTACTCCAAAGTCAGACGTTTATTCATTTGGAATCATATTGCTTAGATTGCTGACAGGGCAACCTGCCTTAGGAATAACAAAGGAAGTGCAGTGTGCATTGGATTCATGTAAGTTGAAGAACCTCTTGGATCCTTTGGCTGGGGACTGGCCTTTTGTGCAGGCTGAACAGTTGACTCGCTTAGCATTGAGATGTTGTGAGATGAATAGAAAAAACAGACCTGATCTTGCATCAGAAGTATGGAGAATTTTAGAGCCGATGAGAGCAGCTTGTGGTGGTGCTTCCTCTTTGCAGTTAACTTCTGAAGAGCATTGCCAAGCTCCTCATTATTTTATTTGTCCAATATTTCAAGAAGTTATGCAGGATCCTCACATGGCCGCAGATGGTTACACTTATGAAGCTGAGGCTTTAAGAGGGTGGCTGGAAAGTGGTCATGACACCTCACCTATGACAAATCTCAAGCTCGCACACTGCAAGCTTATCCCCAATCACGCCCTTCGTTCTGCAATTCAGGAGTGGTTACAACATCATCGAGGAAATTGA 1935 0.4269 MDGNLLEVTSRLLQGKSNSESGQPHHVRSLTAPIPSSRKSAEASSEESCGQSSASPSAFSTCSSGSANEVMQDTNAIDDGSDYMLGLSAYHQRKVDLISSPPSVLDKSMDDFLLDQLEQARIEAENARMEVFRQSIWRGKAEKDAAEAMRRLKVSENFYDVELKLRKGVEQALNKEREELEKTKRQRDVVKEELEFALEQKSSLESKIAASERVVEELEQKIISAVDLLQNYKKERDELQIQHDNALREAVELKKQGEASCRHVLQFFSEFSFSEIAEATTNFNSSLRIGEGGYGSIYRGRLRHTEVAIKMLHSNSMQGPLEFKQEVEVLSKLRHPNLITLIGTCPESWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSALVFLQSCKPHGIVHGDLKPSNILLDANLVTKLSDFGICRVLSNHENSSSKATTFWKTDPKGTFVYLDPEFLASGELTPKSDVYSFGIILLRLLTGQPALGITKEVQCALDSCKLKNLLDPLAGDWPFVQAEQLTRLALRCCEMNRKNRPDLASEVWRILEPMRAACGGASSLQLTSEEHCQAPHYFICPIFQEVMQDPHMAADGYTYEAEALRGWLESGHDTSPMTNLKLAHCKLIPNHALRSAIQEWLQHHRGN* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00672 644 SMART serkin_6 283 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte1g00672 644 Coils Coil 110 134 - -
Pte1g00672 644 CDD STKc_IRAK 289 551 - -
Pte1g00672 644 FunFam receptor-like protein kinase FERONIA 247 355 - -
Pte1g00672 644 CDD RING-Ubox_WDSUB1-like 572 627 - -
Pte1g00672 644 Gene3D Phosphorylase Kinase; domain 1 253 355 - -
Pte1g00672 644 Pfam U-box domain 571 642 IPR003613 GO:0004842|GO:0016567
Pte1g00672 644 ProSitePatterns Protein kinases ATP-binding region signature. 289 310 IPR017441 GO:0005524
Pte1g00672 644 MobiDBLite consensus disorder prediction 1 66 - -
Pte1g00672 644 SUPERFAMILY RING/U-box 564 641 - -
Pte1g00672 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 401 413 IPR008271 GO:0004672|GO:0006468
Pte1g00672 644 Coils Coil 166 256 - -
Pte1g00672 644 Gene3D Transferase(Phosphotransferase) domain 1 356 563 - -
Pte1g00672 644 SUPERFAMILY Protein kinase-like (PK-like) 263 548 IPR011009 -
Pte1g00672 644 ProSiteProfiles U-box domain profile. 570 644 IPR003613 GO:0004842|GO:0016567
Pte1g00672 644 MobiDBLite consensus disorder prediction 10 26 - -
Pte1g00672 644 MobiDBLite consensus disorder prediction 33 66 - -
Pte1g00672 644 ProSiteProfiles Protein kinase domain profile. 283 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte1g00672 644 Pfam Protein kinase domain 287 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte1g00672 644 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 569 644 IPR013083 -
Pte1g00672 644 PANTHER OS02G0152300 PROTEIN 24 636 - -
Pte1g00672 644 SMART Ubox_2 574 637 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00672 Pte-Chr1 9023543 9027740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00672 109 641 U-box Gene Family AT2G45910 64.353 0.0 710
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pte1g00672 Pkinase 4.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00672 - - qsa:O6P43_027236 882.093