Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00663 ATGGGAGGTTGCTGCTGTTCTACCAGAAAGCCTCATCTGCACGGAACACCTGTATACTACTATTGCCCACCACCTTTGGAAGAGCGTGAATCCTTCGCATCTAATGAAGGCACTGGTTCTTCATTCACTGCAAGATTGTTGGTAGGCCTGGAATTGGGAACTTCAATACCTGATATTTACCGCTCCCCTCCCGCTCCTTTGCCATATGATGTCGACTTCGGTTCCAAATCCAGTGGAGAAACAATTAGTGGTACTAGTCTTGAAACCATAACGACATTTGACGAAATCGAGGAATCAGAACCCATAGCTAAAGCTAATTCTTTAGTTCTTTCCCCGAAAAAATTGGAACTATCAAAATCCAGTGAAGCATCCGCATTACAAGTTGAAGAAGAGGATGTTTGTCCAATTTGCCTTGAAGAATATGATGTGCAGAATCCGAAACTTATGACGAATTGTGAACATCACTTTCACTTATCCTGCATACTTGAATGGATGGAAAGAAGTGACTCCTGTCCTATATGTGACCAGGTCTGCTTCTTGCTATTCACCAAATCATTTTCTTGTTTCTGA 570 0.4228 MGGCCCSTRKPHLHGTPVYYYCPPPLEERESFASNEGTGSSFTARLLVGLELGTSIPDIYRSPPAPLPYDVDFGSKSSGETISGTSLETITTFDEIEESEPIAKANSLVLSPKKLELSKSSEASALQVEEEDVCPICLEEYDVQNPKLMTNCEHHFHLSCILEWMERSDSCPICDQVCFLLFTKSFSCF* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00663 189 FunFam Putative E3 ubiquitin-protein ligase RHB1A 110 179 - -
Pte1g00663 189 Pfam Ring finger domain 133 174 IPR001841 -
Pte1g00663 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 179 IPR013083 -
Pte1g00663 189 ProSiteProfiles Zinc finger RING-type profile. 134 175 IPR001841 -
Pte1g00663 189 SMART ring_2 134 174 IPR001841 -
Pte1g00663 189 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 37 178 - -
Pte1g00663 189 SUPERFAMILY RING/U-box 125 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00663 Pte-Chr1 8540146 8543589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00663 1 176 C3H Transcription Factor Family AT4G00335 53.846 3.85e-62 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00663 - - gmx:100804435 251.521