Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00660 ATGGTGTGGTCCGAATCACCTCAGGTTCAAATACCCGTGAACCCACCCGTATCCGCCGTCCTAATCCGCGAATTGCTCCCCATTGTCAAATACCAAGAGCTGTCTTCGATAATGGTTTCCGGAGACCCACCGGAAAGCTGTGCGGTATGCCTGCACGAGTTTGAAGGAGAGGAAGAGATCAGATGGTTGACGAACTGTAAACATATCTTTCACAGAGCATGTTTGGACCGTTGGATGGACCATGATCACAAGACGTGTCCTTTGTGTAGGACACCCTTTGTTTCCGATGGGGTGCAAAGCGAATTTAATCAACGGCTGTGGGCTGCTTCTTGGATCACTACCGATCTTTACAGTCAAGTGGACTTGAAGGAAGGAAGAGCACATCAAGGAGAAGACACAAGGAGCTATGGTTTTGGTCTAGAAGGACACCAAGGGGGAGGAAACCAACCCGAGTAA 456 0.4934 MVWSESPQVQIPVNPPVSAVLIRELLPIVKYQELSSIMVSGDPPESCAVCLHEFEGEEEIRWLTNCKHIFHRACLDRWMDHDHKTCPLCRTPFVSDGVQSEFNQRLWAASWITTDLYSQVDLKEGRAHQGEDTRSYGFGLEGHQGGGNQPE* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00660 151 Pfam Ring finger domain 46 90 IPR001841 -
Pte1g00660 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 95 IPR013083 -
Pte1g00660 151 PANTHER RING ZINC FINGER PROTEIN-RELATED 22 123 - -
Pte1g00660 151 SUPERFAMILY RING/U-box 46 96 - -
Pte1g00660 151 SMART ring_2 47 89 IPR001841 -
Pte1g00660 151 MobiDBLite consensus disorder prediction 130 151 - -
Pte1g00660 151 ProSiteProfiles Zinc finger RING-type profile. 47 90 IPR001841 -
Pte1g00660 151 SMART ringv_2 46 90 IPR011016 GO:0008270
Pte1g00660 151 FunFam RING-H2 finger protein ATL73 22 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00660 Pte-Chr1 8431200 8435535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00660 3 110 C3H Transcription Factor Family AT1G63840 49.550 2.34e-32 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00660 K16281 - mnt:21404323 188.348