Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00643 ATGTCATCTTTCACAGCCACCAGCACCACTACCGCCATACCCACCGGCACAGCACTCCATACTCCCACTTACTTCACCAACCTTGGCCTTGGCTACGCCATAGCCATAGCCTTTGGCTTCCTTGTACTCCTCTCTACCCTCCTTCTGTCCTCTTACCTCTGTTGTCGCGCACGTAACCGTTCGACTCGACACTCAAACCCAGATCACCCTCACTCTGAAGGGATCGTCCTGCCTCGGATTATCTTTGTTGCTGAAGATGAAATCAACCAACGAGAGGATTGTAACGTGGTTGTGGGTCTCGAACAGAACGTCATAAACTCTTACCCCAAGTTCTATTACAGAAAGGACTCAGTGGGTAGCAACGACACGACATGTTCGATATGTTTGTGTGAGTACAAGGATAAGGAGTTGTTAAGGATGATGCCTGAGTGTCGACACTTCTTTCACATCTGTTGTATTGATGTTTGGTTGAAGCTTAACGGGTCGTGTCCAGTTTGCCGGAACTCACCGCTTCCAACCCCGCTGTCTACGCCATTGTCAGAGGTTGTGCCTCTTTCACAGTATTCAGCGGATCGGAGACGCAGGTGA 588 0.4983 MSSFTATSTTTAIPTGTALHTPTYFTNLGLGYAIAIAFGFLVLLSTLLLSSYLCCRARNRSTRHSNPDHPHSEGIVLPRIIFVAEDEINQREDCNVVVGLEQNVINSYPKFYYRKDSVGSNDTTCSICLCEYKDKELLRMMPECRHFFHICCIDVWLKLNGSCPVCRNSPLPTPLSTPLSEVVPLSQYSADRRRR* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00643 195 SMART ring_2 125 166 IPR001841 -
Pte1g00643 195 Pfam Ring finger domain 124 167 IPR001841 -
Pte1g00643 195 PANTHER RING-H2 FINGER PROTEIN ATL67 7 195 IPR044289 GO:0016567|GO:0016740
Pte1g00643 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 170 IPR013083 -
Pte1g00643 195 SUPERFAMILY RING/U-box 104 172 - -
Pte1g00643 195 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00643 Pte-Chr1 8152054 8152641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00643 26 186 C3H Transcription Factor Family AT5G07040 40.491 1.30e-35 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00643 - - pvy:116141324 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g00643 1 8152054 8152641 Pte1g00643 1 8152054 8152641 RCT