Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00614 ATGGGCATTCTGCACCTTCTCTTCTTGCATTTCATGTTTCTTAAAATTTATGCCTCAGACCATTGCCCAGTTTCTACATGTGGCAACAGCAACTTAGAGGTTCGATTTCCTTTCCAACTAGAAAGTTCAAAATCTCGAACTTGTGGTTATCCTGGTTTCAGCCTAACCTGTACTAATAACAACATTACAGTTCTTCAACTTCCTTATTCTGGAGAATTCTTTGTTCGGAATATTAGTTATGCCTCCCAACAGTTACTGATCTATGACCCTGATAAGTGCCTTGCCAAGCGTCTTTTAGATTTCGATCTTTCAAATTCTCCTTTTACAGCTACTTATTTCCAGCACTACAGCTTCCTAAGCTGCCCATATCAAATAGCAGCATCACGTTTCACTACTATTGATTGTCTTAGCAATTCCACAACTTCAGTTATAGCCACTCCTTCCATGTGGTTGGTAAATTCACTGTCTTCTACATGCACAGTCTTTAGAAATCTCTCAGTTCCTGTCACTCGGCCAGTACTGCATGATGAAGATTTCACAGATGACTTAGATTATGATATTTTGATAAACTGGAACATACCAGAATGTCAAAATTGTGAAGCAGAAGGAGGAACCTGTGGATTCAAGAGTAACATGGATCGTCAAATCGGTTGCAGCTTGAAGTCAGGAAAACAATCTAGAGGACTTGTAGTTGTCAGAATCATCTGTCTATCCTTACTTGTCCCAGTTATAATAGTAGCATTTGGAGTAGCAATGGTTGCAAGCTTACTGCGCAGAAGTACAATTGCTCAGAGGTCCTTTACTACAAACACAGTCGCCCCACAACCAGCAGATGTTGCACAGATTGGTCTTGATGAGGCCACTATTGAATCCTATGAAAAGTTTGTCCTTGGGGAGAGTCGCCGTGTACCTGAACCCAACCATGGCACTTGCCCTATATGCTTGTCTGAGTATTGTTCAAAAGAGACAGTAAGGTGTATTCCAGAGTGCAAGCACTGCTTCCATACTGACTGTATAGATGAATGGCTCAGAAAGAACAGCAGTTGTCCAGTTTGCAGAAACTCACCATCCCCTTCTCATGCTGCCTCAAGTAATGTCTGA 1101 0.4151 MGILHLLFLHFMFLKIYASDHCPVSTCGNSNLEVRFPFQLESSKSRTCGYPGFSLTCTNNNITVLQLPYSGEFFVRNISYASQQLLIYDPDKCLAKRLLDFDLSNSPFTATYFQHYSFLSCPYQIAASRFTTIDCLSNSTTSVIATPSMWLVNSLSSTCTVFRNLSVPVTRPVLHDEDFTDDLDYDILINWNIPECQNCEAEGGTCGFKSNMDRQIGCSLKSGKQSRGLVVVRIICLSLLVPVIIVAFGVAMVASLLRRSTIAQRSFTTNTVAPQPADVAQIGLDEATIESYEKFVLGESRRVPEPNHGTCPICLSEYCSKETVRCIPECKHCFHTDCIDEWLRKNSSCPVCRNSPSPSHAASSNV* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00614 366 CDD RING-H2_EL5-like 311 353 - -
Pte1g00614 366 ProSiteProfiles Zinc finger RING-type profile. 311 353 IPR001841 -
Pte1g00614 366 SUPERFAMILY RING/U-box 310 356 - -
Pte1g00614 366 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 357 IPR046948 -
Pte1g00614 366 Pfam Wall-associated receptor kinase galacturonan-binding 22 89 IPR025287 GO:0030247
Pte1g00614 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 358 IPR013083 -
Pte1g00614 366 Pfam Wall-associated receptor kinase C-terminal 153 220 IPR032872 -
Pte1g00614 366 Pfam Ring finger domain 310 353 IPR001841 -
Pte1g00614 366 SMART ring_2 311 352 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00614 Pte-Chr1 7819724 7822754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00614 21 362 C3H Transcription Factor Family AT2G46495 46.532 1.76e-97 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00614 - - dzi:111304835 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g00614 1 7819724 7822754 Pte1g00614 1 7819724 7822754 RCT