Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00603 ATGGCTCACCACCAAGAAGGTGGCTACCTGTACAATGAGCTGTGGAAGGCATGTGCAGGCCCTCTGGTCGATGTCCCTAAGAAGCACCAGAGAGTTTACTACTTTCCACAGGGTCACATGGAACAAGTGGAAGCTTCAACGGATCAGAGACCAAATCAGCTAACCTCGAATTTCAACCTTCCTTCTAAGATTCTTTGTCAAGTTGTCAATATAGAGTTGAAGGCGGAACCAGAAACTGATGAACTTTATGCTCAGATAACTTTAATTCCAGAACCAAATCAAGAAGAGCCTGGGACTCCTGATCCTGTTGTACCTGATCCTCCAAACCCAGTGGTTCATTCATTCTGCAAGACACTAACTGCCTCTGACACTAGCACTCATGGAGGGTTTTCCGTTCTGAGGAAGCATGCTACTGAATGTCTGCCTGAGTTGGATATGACTCAAGAAATCCCAACTCAGGAGTTGATCACAAGTGATCTTCATGGATATGAATGGAGGTTCAAGCATATATTCAGAGGTCAACCTCGAAGGCACTTGCTTACAACAGGCTGGAGCACATTTGTGACATCCAAGAGATTGGTTGCAGGAGATGCTTTTGTGTTCCTCAGGGGGAATAATGGGGAATTGCGGGTTGGAGTGAGAAGGCTTACTCGCCAATTGAGTCATATGCCTCCATCTGTTATATCAAGCCAGAGTATGAATTTGGGAGTGATTGTTACTGCTCTCCATGCTTTGAATACCAAGACAATGTTTCTCGTTTATTACAGGCCAAGGGTTACCCCCTTCATTGTTGGTTTGAACAAGTATCTGGAGGCTGTTAACAATAAGTTTACAGTTGGCATGCGCTTCAAGATGAGGTTTGAGGGAGAAGAGAACCCTGAGAGAAGGTTTTTGGGTACTATAATTGGGGTTGAGGATATATCACCGCAATGGTCAAATTCTCCATGGAGGTCTCTAAAGGTTCAATGGGATGAACCAGCAATAGTTCCAAGGCCAGATAGGGTTTCTCCTTGGGAGATAGAGCCTTTTACAGCGTCTGCAGTAAATCTCACCCAACCAGGGGTGAGGAAAAGATTGCGCCCATCCGAGATGTTATCCGACAATGCCTCATGCACAACTGCTTCCGCTGGCTGGCATCATTGTATAAACAATGCCCATGAGCTTATGCAACTGGGCGGAGTTTCTGAAGTCCACAGTGGAGAAAGTCCAGCAGCATGGCCCATGCTCAAAGAAACCACTGGCATTGTTAGTAGGGGTAGCTGCTGTAGCTCAAAATTTGTCGGGGCAAGTACACGGTCTTCTGCACATTTCAATGCCTCTGCAGGCTCACCATCAGTACCAGTTAATGCTGTTCCTGTTCCACCTGCACCAAGTGATGTGCTCAATGACCAGGACGAATTGGCAAAAAAATCTGAGAACCCTACAGGTTGCTGGTTGTTTGGAATTGATTTGTCAAATGACACCAACCCTGCTGCTCCACAAGAGAAGGGAGTATCAAATGCAGCAAAAGTTCCCACTGTTATCAATGATCTTTCTCCCGCTTCTTTCAAAATGAATCCAAATCGGATGTCCTCAAAAGAGCAAAAGCAGTCAGCATCTAATGCATTGCCAACTGAGATGCAAAGAAAGGACTTGTTAGTGGTTTCCCAGCGGAGTCGTATTAAAGTGAAGATGCAAGGAGTTTCGGTTGGTCGAGCAGTGGACTTGACGAAGTTAAATGGCTATGATGATCTTCTTGATGAGATAGAGAAATTGTTTGACATTAAAGGAGATCTTCGTCAACCAAGCAAATGGGCTATCAATTTTAATGATGATAAAAATGATATGATGCTTGTTGGCAATCATCCTTGGCTGGAGTTCTGCAAGATGGTGAAGAGGATTTTCATCAAGTCTAGTGATGAGGTCACAAGGACCAAAACTAAAGGCAAGTTCCCTTCACCTGCTTCCGAGAATGAACGAAACATCCCCAGTCAGGATACAAGGCATCATGCTCAACGATCATAA 2004 0.4491 MAHHQEGGYLYNELWKACAGPLVDVPKKHQRVYYFPQGHMEQVEASTDQRPNQLTSNFNLPSKILCQVVNIELKAEPETDELYAQITLIPEPNQEEPGTPDPVVPDPPNPVVHSFCKTLTASDTSTHGGFSVLRKHATECLPELDMTQEIPTQELITSDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGNNGELRVGVRRLTRQLSHMPPSVISSQSMNLGVIVTALHALNTKTMFLVYYRPRVTPFIVGLNKYLEAVNNKFTVGMRFKMRFEGEENPERRFLGTIIGVEDISPQWSNSPWRSLKVQWDEPAIVPRPDRVSPWEIEPFTASAVNLTQPGVRKRLRPSEMLSDNASCTTASAGWHHCINNAHELMQLGGVSEVHSGESPAAWPMLKETTGIVSRGSCCSSKFVGASTRSSAHFNASAGSPSVPVNAVPVPPAPSDVLNDQDELAKKSENPTGCWLFGIDLSNDTNPAAPQEKGVSNAAKVPTVINDLSPASFKMNPNRMSSKEQKQSASNALPTEMQRKDLLVVSQRSRIKVKMQGVSVGRAVDLTKLNGYDDLLDEIEKLFDIKGDLRQPSKWAINFNDDKNDMMLVGNHPWLEFCKMVKRIFIKSSDEVTRTKTKGKFPSPASENERNIPSQDTRHHAQRS* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00603 667 MobiDBLite consensus disorder prediction 636 667 - -
Pte1g00603 667 SUPERFAMILY DNA-binding pseudobarrel domain 106 244 IPR015300 -
Pte1g00603 667 Pfam B3 DNA binding domain 115 215 IPR003340 GO:0003677
Pte1g00603 667 SMART B3_2 115 217 IPR003340 GO:0003677
Pte1g00603 667 Pfam Auxin response factor 241 320 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte1g00603 667 Gene3D - 547 638 - -
Pte1g00603 667 Gene3D - 276 349 - -
Pte1g00603 667 Gene3D - 112 216 IPR015300 -
Pte1g00603 667 Pfam AUX/IAA family 515 587 IPR033389 -
Pte1g00603 667 FunFam Auxin response factor 276 347 - -
Pte1g00603 667 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 637 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte1g00603 667 SUPERFAMILY CAD & PB1 domains 549 627 - -
Pte1g00603 667 ProSiteProfiles PB1 domain profile. 551 632 IPR000270 GO:0005515
Pte1g00603 667 MobiDBLite consensus disorder prediction 513 536 - -
Pte1g00603 667 CDD B3_DNA 113 215 IPR003340 GO:0003677
Pte1g00603 667 FunFam Auxin response factor 113 217 - -
Pte1g00603 667 ProSiteProfiles B3 DNA-binding domain profile. 115 217 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00603 Pte-Chr1 7659957 7664691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00603 7 637 B3 DNA Binding Superfamily AT4G23980 55.086 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte1g00603 AUX_IAA 3.3e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00603 K14486 - zju:107423671 737.643