Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00592 ATGACAATCTCAGATCTGAATTATGGTTTAAAACCTTCTATATGCAATCAACATGATATGTTCATCATTCAACGCCACTACAGCTTGTTGTGCATCAGTCCTCACATTTGTGCAGGCTTTGCATTTGTTTATTATCAGGATGAACGTGATGCTGAAGATGCAATCCGTGCCCTGGACAATATTCCCTTTGGTCATGACAGGCGCAAGCTGTCTGTGGAATGGGCCAAGGGTGAGCGTGGGCGCCATCGTGATGGGTCAAAGAACCAGAGACCCACAAAAACATTGTTCGTCATCAACTTCGATCAAGTTCGCACCAGAGTTCGGGATATTGAGAGACACTTTGAACCTTATGGGAAGATTCTGTCAGTTCGCATCCGTCGTAACTTTGCCTTTGTGCAGTTTGAGACTCAAGAAGATGCTACTAAGGCCCTTGAGTGCACTCACATGAGTAAGATTTTGGACAGGGTTGTGTCAGTGGAGTATGCTCTTAGGGATGATGATGAGAGAGGTGACAAGCATTATGACAGCCCTAGAAGGGGCTATGGGCGATCACCAAGTCCAGCTTACCGCCGACGTCCAAGTCCTGACTATGGTCGGCCACGAAGCCCTATTTATGACAGGTATGATGGCCCTGTCTATGACAGGCACAGGAGTCCCGATTATGGAAGACACAGGAGTCCCGATTATGGCAGACGCAGGATCCCTGATTATGGCAGGCGTAGGAGCCCTGATTATGGTAGACACAGGAGTCCCGGTTATGGTAGATACCGCAGTCGCTCACCTATTCGGAGGTCCAGAACATGA 804 0.4826 MTISDLNYGLKPSICNQHDMFIIQRHYSLLCISPHICAGFAFVYYQDERDAEDAIRALDNIPFGHDRRKLSVEWAKGERGRHRDGSKNQRPTKTLFVINFDQVRTRVRDIERHFEPYGKILSVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDERGDKHYDSPRRGYGRSPSPAYRRRPSPDYGRPRSPIYDRYDGPVYDRHRSPDYGRHRSPDYGRRRIPDYGRRRSPDYGRHRSPGYGRYRSRSPIRRSRT* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00592 267 MobiDBLite consensus disorder prediction 168 267 - -
Pte1g00592 267 SUPERFAMILY RNA-binding domain, RBD 38 83 IPR035979 GO:0003676
Pte1g00592 267 Gene3D - 32 85 IPR012677 -
Pte1g00592 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 64 IPR000504 GO:0003723
Pte1g00592 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 157 IPR000504 GO:0003723
Pte1g00592 267 SMART rrm1_1 3 73 IPR000504 GO:0003723
Pte1g00592 267 SMART rrm1_1 94 160 IPR000504 GO:0003723
Pte1g00592 267 MobiDBLite consensus disorder prediction 208 251 - -
Pte1g00592 267 Gene3D - 86 176 IPR012677 -
Pte1g00592 267 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 34 108 - -
Pte1g00592 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 164 IPR000504 GO:0003723
Pte1g00592 267 FunFam Serine/arginine-rich splicing factor RS31 85 175 - -
Pte1g00592 267 SUPERFAMILY RNA-binding domain, RBD 84 189 IPR035979 GO:0003676
Pte1g00592 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 77 IPR000504 GO:0003723
Pte1g00592 267 CDD RRM2_AtRSp31_like 94 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00592 Pte-Chr1 7506808 7510729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00592 39 155 Eukaryotic Initiation Factors Gene Family AT4G34110 29.032 1.01e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00592 K12893 - gmx:100797709 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g00592 1 7506808 7510729 Pte1g00592 1 7506808 7510729 RCT