Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00587 ATGTTAGATCATGAAGAATATTCACAGTCTTCAATGGGTGGTGATGACATAGAGGTGTACAGTACCTGCATGAATTCCCCAGTAAACATGAGAAAGAAGAAAAGCAAAATCAACAAGAGAAGGTTCAGCGATGAGCAGATCAAATCATTGGAATCAATTTTCGAAAATGAATCAAGACTCGAGCCCAGAAAAAAGTTGCTGCTGGCAAGAGAGTTAGGATTGCAGCCAAGGCAGGTTGCCATATGGTTCCAAAACAAGAGAGCAAGATGGAAATCAAAGCAGATTGAGAAAGACTACAGCACACTACGAGCAAATTACAACAGTCTGGCAACACGTTATGAAGCTCTCAAGAAAGAGAAACAGTCATTGGTTATGCAGTTGCAGCAGCTGAATGAACGAATAGGAAAGCCACAAAAGGATAGCCAGGTGTGTGCGCAGGCTAAAACTGAAAACAGTATGGATAGTGCACAGTCATACAATGGAGACACTACGACTCGTGAAGCTGAGGTGAAGGCTAGGTTGACAGAGGAAGGAGCAGCTGAGGATGGAAGACTTGCTGGGGTTCTGTCTGATTGTGATAGTAAGATAAAAGCAGAATATTTTTCACTGGAAGAGGGTTCTGAGCTTTTGGATTTGATGGATCCAGGTGAAGGTTCAATGACATCAACAGAGGATTGGGACAAGTTTGAGTCTGATGGTCTATTAGACCAATCTGCCAGCGGTAGTCCTTGGTGGGATTTCTGGTCATGA 750 0.432 MLDHEEYSQSSMGGDDIEVYSTCMNSPVNMRKKKSKINKRRFSDEQIKSLESIFENESRLEPRKKLLLARELGLQPRQVAIWFQNKRARWKSKQIEKDYSTLRANYNSLATRYEALKKEKQSLVMQLQQLNERIGKPQKDSQVCAQAKTENSMDSAQSYNGDTTTREAEVKARLTEEGAAEDGRLAGVLSDCDSKIKAEYFSLEEGSELLDLMDPGEGSMTSTEDWDKFESDGLLDQSASGSPWWDFWS* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00587 249 SMART HOX_1 35 97 IPR001356 GO:0003677
Pte1g00587 249 CDD homeodomain 36 94 IPR001356 GO:0003677
Pte1g00587 249 Gene3D - 28 101 - -
Pte1g00587 249 Pfam Homeobox associated leucine zipper 93 133 IPR003106 GO:0006355|GO:0043565
Pte1g00587 249 FunFam Homeobox-leucine zipper protein ATHB-7 20 93 - -
Pte1g00587 249 Coils Coil 99 133 - -
Pte1g00587 249 ProSiteProfiles 'Homeobox' domain profile. 33 93 IPR001356 GO:0003677
Pte1g00587 249 ProSitePatterns 'Homeobox' domain signature. 68 91 IPR017970 GO:0000981|GO:0006355
Pte1g00587 249 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 32 161 IPR045224 GO:0003700
Pte1g00587 249 SUPERFAMILY Homeodomain-like 16 94 IPR009057 -
Pte1g00587 249 Pfam Homeodomain 39 91 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00587 Pte-Chr1 7477779 7479807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00587 41 250 Homeobox Transcription Factor Family AT3G61890 52.778 1.51e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte1g00587 Homeodomain 6.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00587 K09338 - qsa:O6P43_027419 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g00587 1 7477779 7479807 Pte1g00587 1 7477779 7479807 RCT