Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00578 ATGAGAATATCTGTTAATGGACAATCTCAAGTGCCTCCTGGATTCAGGTTTCATCCAACAGAGGAGGAACTGTTGCAATATTACCTGAAGAAGAGAGTTTCCTATCAGAAAATGGATCTTGATGTCATTCGTGACGTTGATCTGAACAAACTCGAGCCATGGGATATTCAAGAAATGTGCCAAATCGGAACCACCCCTCAGAATGATTGGTACTTCTTCAGTCACATGGACAAGAAGTATCCCTCCGGAACACGTACTAATCGAGCCACGGCTGCAGGGTTCTGGAAGGCTACCGGCCGTGATAAGGCAATATATAGCAACTGCAGGCGGATTGGAATGAGGAAGACTCTGGTTTTCTATAGAGGCCGAGCCCCACATGGTCAAAAGTCTCATTGGATCATGCATGAGTATAGACTTGACGATAATACTAGAACTGATCATGCCAACATTTTTTCCAATGTGATCGGAAAGATGACACGAGAACAAGGATGGGTGGTATGTAGAATATTCAAGAAGAAGAATCACATTAAAACCCTAGATACCCCAGCTAATGACTCAAGAAGAAGACGTTTCTATGATCCATGTAATATGGAAGGATCTTTAGAGCTAATCGTTAAACAATTGGAAAGGACTTGCAAAGAACAAAATGAATCAAATATTGAGTATGGAAGACCATCACTCCGGCCAATTGACACAGGCATGAACAAAGGGTACTGCCACGACATGTTTTTCCAGCTTCCAAGCTTAGAAAGCCCAAACTCGACAACTAGCCAGAATTGTTACGAGCCAATTGTACGAGAGCTAACCCAAGAAAATGAGGTTTCGGTTGGAACAAATCACCATGTCATCAGTGGTTACCGTTGCACAGCAGCTGATCATATAAACTTGGCCAACCAACTTGATGCATCTAGCTTTCCAGGTGGTCTCATCTCCAACTGCGTCGCACTTGATCGCCTAGGCAATTATCACGCTTCGGTGAAGGCACCATAG 990 0.4364 MRISVNGQSQVPPGFRFHPTEEELLQYYLKKRVSYQKMDLDVIRDVDLNKLEPWDIQEMCQIGTTPQNDWYFFSHMDKKYPSGTRTNRATAAGFWKATGRDKAIYSNCRRIGMRKTLVFYRGRAPHGQKSHWIMHEYRLDDNTRTDHANIFSNVIGKMTREQGWVVCRIFKKKNHIKTLDTPANDSRRRRFYDPCNMEGSLELIVKQLERTCKEQNESNIEYGRPSLRPIDTGMNKGYCHDMFFQLPSLESPNSTTSQNCYEPIVRELTQENEVSVGTNHHVISGYRCTAADHINLANQLDASSFPGGLISNCVALDRLGNYHASVKAP* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00578 329 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 245 - -
Pte1g00578 329 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
Pte1g00578 329 ProSiteProfiles NAC domain profile. 11 172 IPR003441 GO:0003677|GO:0006355
Pte1g00578 329 Gene3D NAC domain 20 177 IPR036093 GO:0003677|GO:0006355
Pte1g00578 329 FunFam NAC domain-containing protein 20 176 - -
Pte1g00578 329 SUPERFAMILY NAC domain 7 172 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00578 Pte-Chr1 7356944 7358661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00578 1 319 NAC Transcription Factor Family AT2G46770 54.407 3.50e-113 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte1g00578 NAM 4.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00578 - - pvy:116109017 401.364