Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00576 ATGATGTCTCAACAAAGGCCATTTCTGATGGTGGGTGGAAACAATTATCCCAGTCAAAACATCGACACAACATTTACCAAGGTTTTTGTTGGGGGGTTGGCTTGGGAAACACAAAGGGACACAATGAGAAGGTATTTTGAGCAGTTTGGTGAGATTTTAGAAGCTGTTGTTATCACTGACAAAAATACAGGGAGATCCAAAGGTTATGGCTTTGTTACGTTTAACGATCCAGAGGCAGCCATGAGGGCATGTCAGAATCCTTCACCTGTAATTGACGGAAGAAGAGCAAACTGCAATCTAGCATATCTTGGAGCAAGCAAGACCCGTCCACCAACTCCTCAACATGGTGGAGGACGGTTCAGACCAGCAACCGGACCGGTGGGGCCACCTGGTTATGATCATCAAAGTTCTTCATTCTTCCACCAATTTCCTGGACAATATACATTTACTAATTCGGCATATGGGAACAGATATTCTGGGTACTCACAAGATAACATGTTCCCGATGAACTACTACAGTGGTTATGGTGGTCATCAACAGTTATCACCTTACTACTACACTGGAGCATCATCCTCTGCAGGGTTGATGCACAATTTTTATCCATTCTATGCACAATATGGTCAGAGCAGTCAGACTCATGCGTTTGGAATTCAATACCCCCAGATGATACAGTTCCCTAATTATTTGCCTCCGCATTATGGCTCTGCTGGTATCCTCTCACTCCCATCTTCAATGGCAATGTCAGCTACTACGACCCCAGGTACAACTGCAACAGCAGCAGTAGCTGGATCTGGGTTGGGTGTTACTGCAGGGGTGACTTCTTCACAACCTTCTGCAACAGTTTCTGAGGAAAAACCTTCAAATTCATGA 870 0.4471 MMSQQRPFLMVGGNNYPSQNIDTTFTKVFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFNDPEAAMRACQNPSPVIDGRRANCNLAYLGASKTRPPTPQHGGGRFRPATGPVGPPGYDHQSSSFFHQFPGQYTFTNSAYGNRYSGYSQDNMFPMNYYSGYGGHQQLSPYYYTGASSSAGLMHNFYPFYAQYGQSSQTHAFGIQYPQMIQFPNYLPPHYGSAGILSLPSSMAMSATTTPGTTATAAVAGSGLGVTAGVTSSQPSATVSEEKPSNS* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00576 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 103 IPR000504 GO:0003723
Pte1g00576 289 SMART rrm1_1 27 99 IPR000504 GO:0003723
Pte1g00576 289 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 21 107 - -
Pte1g00576 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 85 IPR000504 GO:0003723
Pte1g00576 289 MobiDBLite consensus disorder prediction 105 128 - -
Pte1g00576 289 CDD RRM_RBM24_RBM38_like 26 101 - -
Pte1g00576 289 PANTHER BOULE-RELATED 21 258 - -
Pte1g00576 289 SUPERFAMILY RNA-binding domain, RBD 16 130 IPR035979 GO:0003676
Pte1g00576 289 Gene3D - 3 120 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00576 Pte-Chr1 7326185 7329815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00576 17 101 C2H2 Transcription Factor Family AT2G19380 40.000 8.03e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00576 - - qsu:111994039 377.867