Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00571 ATGTCACAAGGACCTGAAATTGAGGAGCGTGTAGATTTTGATGACGAAAATTATGTGGAAGAGATGGATGACGATATCGAGGAGCAAATTGATGAGGATGGTTCTGATGGAGGTGCTGAGGAAAATAACGAAGAGGATGTAGAAGAAGAAGTACATGAAGACGCAGCAGCAGAGGCTAGTGAAAAGGATCAATCACCAGAACCAGATGGGGGTGAGATTGCTATTGAATCCGTGGAAGATGAACAGGAACCCTCTGCTTCAAATGGTGAAGATGAAAAAGAAAAACACGACCAACTGCTTTCCCTTCCTCCTCATGGTTCTGAAGTTTTCATTGGTGGACTTCCTCGAGATGTGTCTGAAGAGGATTTAAGTGCTCTATGTGAACCATTTGGCGAAATTTTAGAGTTGAGATTAATGAAAGATAAGAACTCAGGAGAAGGAAAAGGCTATGCTTTTGTAGCATTTAAAACAAAAGAGGTTGCACAAAAGGCCATTGAAGCTGTACATAACAAAGAATTCAAGGGTAGATCCTTAAGGTGTTCACTTTCAGATACTAAGCACAGGTTGTTCATTCGCAATGTTCCTAAGACCTGGACGGAGGAAGAATTGGGGAAAGTCATTGAGGGAGTTGGTCCTGGAGTTGAGAACATTGAGCTCATAAAGGATCCCATTAATCCAGGCAAGAATCGAGGATTTGCTTTCGTTTTGTACTACAATAATGCTTGTGCTGATTATGCGAGGCAGAAAATGTCAAATGCGAATTTTAAGTTAGATGGAAACACCCCTACTGTCACATGGGCTGATCCCAAAACGTCACCTGATCATTCTGCTTCTGCTCAGGTAAAGGCTCTTTACGTGAAGAACATTCCTGAGAATACTACCACAGAACAACTGAAGGAATTATTCTGTCGCCATGGGGAAGTGACAAAAGTAGTGATGCCACCTGGGAAAGCTGGAGGAAAACGTGATTTTGGGTTCATCCACTATGCTGAGAGGTCAAGTGCATTAAGGGCTATCAAAGAAACAGAGAAGTATGAAATAGATGGCCAAGTGTTAGAGGTTGTCCTTGCAAAGCCCCAATCGGAGAAGAAGCCTGACGCACATTCTTTTATCTCGGGCCCTCTTCCAAACCATGGTTCTCATCCTGGCTTTGGTGGATTTTCTCCAAATGCATTTGGCTCTTTAGGAGCTGGTTATGGTGTCACTGCTGGTTTTCAGCAGCCAATGATATATGGTCGCGGTCCTATGCCAGCGGGAATGCAAATGGTGCCAATGGTTTTGCCAGATGGTCGGATTGGATATGTCCTCCAACAGCCTGGGGTACAGATGCCACCTCCACCACGACCTCGTAGAAGCAATGCCCCTAGTGGTCCACCGGGCAGAGGAGGAGGAGGTGGTGGCGCTGAAGATGGCAACCGGAACAGGAGATTCCGCCCTTACTAG 1443 0.4518 MSQGPEIEERVDFDDENYVEEMDDDIEEQIDEDGSDGGAEENNEEDVEEEVHEDAAAEASEKDQSPEPDGGEIAIESVEDEQEPSASNGEDEKEKHDQLLSLPPHGSEVFIGGLPRDVSEEDLSALCEPFGEILELRLMKDKNSGEGKGYAFVAFKTKEVAQKAIEAVHNKEFKGRSLRCSLSDTKHRLFIRNVPKTWTEEELGKVIEGVGPGVENIELIKDPINPGKNRGFAFVLYYNNACADYARQKMSNANFKLDGNTPTVTWADPKTSPDHSASAQVKALYVKNIPENTTTEQLKELFCRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALRAIKETEKYEIDGQVLEVVLAKPQSEKKPDAHSFISGPLPNHGSHPGFGGFSPNAFGSLGAGYGVTAGFQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQMPPPPRPRRSNAPSGPPGRGGGGGGAEDGNRNRRFRPY* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00571 480 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 20 451 - -
Pte1g00571 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 352 IPR000504 GO:0003723
Pte1g00571 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 256 IPR000504 GO:0003723
Pte1g00571 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 179 IPR000504 GO:0003723
Pte1g00571 480 MobiDBLite consensus disorder prediction 436 480 - -
Pte1g00571 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Pte1g00571 480 MobiDBLite consensus disorder prediction 73 87 - -
Pte1g00571 480 SUPERFAMILY RNA-binding domain, RBD 104 271 IPR035979 GO:0003676
Pte1g00571 480 Gene3D - 269 368 IPR012677 -
Pte1g00571 480 Gene3D - 14 187 IPR012677 -
Pte1g00571 480 MobiDBLite consensus disorder prediction 1 108 - -
Pte1g00571 480 Gene3D - 188 268 IPR012677 -
Pte1g00571 480 MobiDBLite consensus disorder prediction 9 54 - -
Pte1g00571 480 MobiDBLite consensus disorder prediction 440 454 - -
Pte1g00571 480 CDD RRM_SF 109 181 - -
Pte1g00571 480 SUPERFAMILY RNA-binding domain, RBD 277 386 IPR035979 GO:0003676
Pte1g00571 480 MobiDBLite consensus disorder prediction 55 69 - -
Pte1g00571 480 SMART rrm1_1 108 181 IPR000504 GO:0003723
Pte1g00571 480 SMART rrm1_1 283 355 IPR000504 GO:0003723
Pte1g00571 480 SMART rrm1_1 188 265 IPR000504 GO:0003723
Pte1g00571 480 SMART rrm2_1 108 181 IPR003954 GO:0003676
Pte1g00571 480 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 188 268 - -
Pte1g00571 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 359 IPR000504 GO:0003723
Pte1g00571 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 269 IPR000504 GO:0003723
Pte1g00571 480 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00571 Pte-Chr1 7292897 7297353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00571 109 434 Eukaryotic Initiation Factors Gene Family AT1G71770 26.842 2.56e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00571 K13161 - qsa:O6P43_027427 676.011