Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte1g00571 | ATGTCACAAGGACCTGAAATTGAGGAGCGTGTAGATTTTGATGACGAAAATTATGTGGAAGAGATGGATGACGATATCGAGGAGCAAATTGATGAGGATGGTTCTGATGGAGGTGCTGAGGAAAATAACGAAGAGGATGTAGAAGAAGAAGTACATGAAGACGCAGCAGCAGAGGCTAGTGAAAAGGATCAATCACCAGAACCAGATGGGGGTGAGATTGCTATTGAATCCGTGGAAGATGAACAGGAACCCTCTGCTTCAAATGGTGAAGATGAAAAAGAAAAACACGACCAACTGCTTTCCCTTCCTCCTCATGGTTCTGAAGTTTTCATTGGTGGACTTCCTCGAGATGTGTCTGAAGAGGATTTAAGTGCTCTATGTGAACCATTTGGCGAAATTTTAGAGTTGAGATTAATGAAAGATAAGAACTCAGGAGAAGGAAAAGGCTATGCTTTTGTAGCATTTAAAACAAAAGAGGTTGCACAAAAGGCCATTGAAGCTGTACATAACAAAGAATTCAAGGGTAGATCCTTAAGGTGTTCACTTTCAGATACTAAGCACAGGTTGTTCATTCGCAATGTTCCTAAGACCTGGACGGAGGAAGAATTGGGGAAAGTCATTGAGGGAGTTGGTCCTGGAGTTGAGAACATTGAGCTCATAAAGGATCCCATTAATCCAGGCAAGAATCGAGGATTTGCTTTCGTTTTGTACTACAATAATGCTTGTGCTGATTATGCGAGGCAGAAAATGTCAAATGCGAATTTTAAGTTAGATGGAAACACCCCTACTGTCACATGGGCTGATCCCAAAACGTCACCTGATCATTCTGCTTCTGCTCAGGTAAAGGCTCTTTACGTGAAGAACATTCCTGAGAATACTACCACAGAACAACTGAAGGAATTATTCTGTCGCCATGGGGAAGTGACAAAAGTAGTGATGCCACCTGGGAAAGCTGGAGGAAAACGTGATTTTGGGTTCATCCACTATGCTGAGAGGTCAAGTGCATTAAGGGCTATCAAAGAAACAGAGAAGTATGAAATAGATGGCCAAGTGTTAGAGGTTGTCCTTGCAAAGCCCCAATCGGAGAAGAAGCCTGACGCACATTCTTTTATCTCGGGCCCTCTTCCAAACCATGGTTCTCATCCTGGCTTTGGTGGATTTTCTCCAAATGCATTTGGCTCTTTAGGAGCTGGTTATGGTGTCACTGCTGGTTTTCAGCAGCCAATGATATATGGTCGCGGTCCTATGCCAGCGGGAATGCAAATGGTGCCAATGGTTTTGCCAGATGGTCGGATTGGATATGTCCTCCAACAGCCTGGGGTACAGATGCCACCTCCACCACGACCTCGTAGAAGCAATGCCCCTAGTGGTCCACCGGGCAGAGGAGGAGGAGGTGGTGGCGCTGAAGATGGCAACCGGAACAGGAGATTCCGCCCTTACTAG | 1443 | 0.4518 | MSQGPEIEERVDFDDENYVEEMDDDIEEQIDEDGSDGGAEENNEEDVEEEVHEDAAAEASEKDQSPEPDGGEIAIESVEDEQEPSASNGEDEKEKHDQLLSLPPHGSEVFIGGLPRDVSEEDLSALCEPFGEILELRLMKDKNSGEGKGYAFVAFKTKEVAQKAIEAVHNKEFKGRSLRCSLSDTKHRLFIRNVPKTWTEEELGKVIEGVGPGVENIELIKDPINPGKNRGFAFVLYYNNACADYARQKMSNANFKLDGNTPTVTWADPKTSPDHSASAQVKALYVKNIPENTTTEQLKELFCRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALRAIKETEKYEIDGQVLEVVLAKPQSEKKPDAHSFISGPLPNHGSHPGFGGFSPNAFGSLGAGYGVTAGFQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQMPPPPRPRRSNAPSGPPGRGGGGGGAEDGNRNRRFRPY* | 481 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte1g00571 | 480 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 20 | 451 | - | - | |
Pte1g00571 | 480 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 284 | 352 | IPR000504 | GO:0003723 | |
Pte1g00571 | 480 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 189 | 256 | IPR000504 | GO:0003723 | |
Pte1g00571 | 480 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 109 | 179 | IPR000504 | GO:0003723 | |
Pte1g00571 | 480 | MobiDBLite | consensus disorder prediction | 436 | 480 | - | - | |
Pte1g00571 | 480 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 107 | 185 | IPR000504 | GO:0003723 | |
Pte1g00571 | 480 | MobiDBLite | consensus disorder prediction | 73 | 87 | - | - | |
Pte1g00571 | 480 | SUPERFAMILY | RNA-binding domain, RBD | 104 | 271 | IPR035979 | GO:0003676 | |
Pte1g00571 | 480 | Gene3D | - | 269 | 368 | IPR012677 | - | |
Pte1g00571 | 480 | Gene3D | - | 14 | 187 | IPR012677 | - | |
Pte1g00571 | 480 | MobiDBLite | consensus disorder prediction | 1 | 108 | - | - | |
Pte1g00571 | 480 | Gene3D | - | 188 | 268 | IPR012677 | - | |
Pte1g00571 | 480 | MobiDBLite | consensus disorder prediction | 9 | 54 | - | - | |
Pte1g00571 | 480 | MobiDBLite | consensus disorder prediction | 440 | 454 | - | - | |
Pte1g00571 | 480 | CDD | RRM_SF | 109 | 181 | - | - | |
Pte1g00571 | 480 | SUPERFAMILY | RNA-binding domain, RBD | 277 | 386 | IPR035979 | GO:0003676 | |
Pte1g00571 | 480 | MobiDBLite | consensus disorder prediction | 55 | 69 | - | - | |
Pte1g00571 | 480 | SMART | rrm1_1 | 108 | 181 | IPR000504 | GO:0003723 | |
Pte1g00571 | 480 | SMART | rrm1_1 | 283 | 355 | IPR000504 | GO:0003723 | |
Pte1g00571 | 480 | SMART | rrm1_1 | 188 | 265 | IPR000504 | GO:0003723 | |
Pte1g00571 | 480 | SMART | rrm2_1 | 108 | 181 | IPR003954 | GO:0003676 | |
Pte1g00571 | 480 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 188 | 268 | - | - | |
Pte1g00571 | 480 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 282 | 359 | IPR000504 | GO:0003723 | |
Pte1g00571 | 480 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 187 | 269 | IPR000504 | GO:0003723 | |
Pte1g00571 | 480 | FunFam | Heterogeneous nuclear ribonucleoprotein Q isoform A | 8 | 187 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte1g00571 | Pte-Chr1 | 7292897 | 7297353 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte1g00571 | 109 | 434 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 26.842 | 2.56e-20 | 92.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte1g00571 | K13161 | - | qsa:O6P43_027427 | 676.011 |