Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00556 ATGGAGAGGCTCCAAGGTCCCATCAATTCATTTCAGTGCTTTTGGGAGCATTTGGAAGCAAACTGCTTAGAGCAAAGTGCATTCAGCGCCAGCATAGGTAACTTCAAATTCAGAGGGATAGAAGATGAGCAGTTTTCAGGGTTAGAAGACGAAATGCCATTTTTACAGATGCTTCAAAGTGTGGAAACCCCACAATATTTTACTCTCAAAGAACCGAACTTTCAGACCCTTCGGAGATTACAACACTTGAGAAAGCCATTGGGAGGTATAACTTTCATACCCAAAATGGAGACTCGGATGCAAATGCAAGCTGTAGAGCTTGAAAGTTGTGTGACAAATGACAAGTTGGAGATACAGTCTCCTACGAAATCTGAAAGCAATCTCTTCCAACATCCACATTCAGACAACCAAGAACATCATACCTCAGATGAAAATGGCGGAAAAGATGTTAAAGCAAAATCAACTAGTGCTCGGCCTAACCCACCAACTTGGCCTAAACAGACTAAGTCTTCAAATTCGTCTCATTTACTCACCAAAGAACGAAGGAAGCGGAAAAGAACAAGGCCAGCCAAGAACAAAGAAGACATAGAGAACCAACGCATGACACATATAGCTGTCGAACGAAATCGGAGACGTCAAATGAATGACCATCTCAGTGTCCTAAGGTCACTCATGCCTCCTTCCTATACTCAAAGGGGTGACCAAGCATCTATCATTGGAGGTGCAATAGATTTTGTGAAGGAATTGGAACAGTTGCTACAATCCCTTGAGGCACAAAAGAGTATAAGGAGTGGTGAAGCGTTTGAGTCCAGTACTGCGTTTTTGGGACCATCAATATATGATTGTGGAGCTGGATCGTGTGCAGAAGGAGATTGTGGGCAAGGAATGAAGGCAGAAAATAAATCAGATGCAGCTGACATAGAGGCCACTGTGATTCAAACTCATGTGAACTTGAAAATCCAAAGCCAAAGGAAACATGGGTTATTGTTGAAAGCCATACTTTCTCTGGAGGATCTTAGGCTAACTGTCTTGCACCTCAACATTACTTCCTCTCAGGATTCAGTCCTGTACTCATTCACTCTCAAGATTGAAGATGATTGCAAGCTGGGATCAGCAAATGAGATAGCAGAAGCTGTTCATCAGATCTTCAGCTTCATGCATGATACCCTAAATTAA 1176 0.4252 MERLQGPINSFQCFWEHLEANCLEQSAFSASIGNFKFRGIEDEQFSGLEDEMPFLQMLQSVETPQYFTLKEPNFQTLRRLQHLRKPLGGITFIPKMETRMQMQAVELESCVTNDKLEIQSPTKSESNLFQHPHSDNQEHHTSDENGGKDVKAKSTSARPNPPTWPKQTKSSNSSHLLTKERRKRKRTRPAKNKEDIENQRMTHIAVERNRRRQMNDHLSVLRSLMPPSYTQRGDQASIIGGAIDFVKELEQLLQSLEAQKSIRSGEAFESSTAFLGPSIYDCGAGSCAEGDCGQGMKAENKSDAADIEATVIQTHVNLKIQSQRKHGLLLKAILSLEDLRLTVLHLNITSSQDSVLYSFTLKIEDDCKLGSANEIAEAVHQIFSFMHDTLN* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00556 391 MobiDBLite consensus disorder prediction 132 151 - -
Pte1g00556 391 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 198 269 IPR036638 GO:0046983
Pte1g00556 391 CDD bHLH_AtFAMA_like 201 260 - -
Pte1g00556 391 PANTHER MAX DIMERIZATION, MAD 130 386 - -
Pte1g00556 391 Coils Coil 246 266 - -
Pte1g00556 391 Gene3D - 188 269 IPR036638 GO:0046983
Pte1g00556 391 SMART finulus 204 255 IPR011598 GO:0046983
Pte1g00556 391 MobiDBLite consensus disorder prediction 120 201 - -
Pte1g00556 391 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 249 IPR011598 GO:0046983
Pte1g00556 391 MobiDBLite consensus disorder prediction 156 174 - -
Pte1g00556 391 Pfam Helix-loop-helix DNA-binding domain 199 250 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00556 Pte-Chr1 7117321 7119173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00556 33 383 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 43.611 4.59e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte1g00556 HLH 1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00556 - - gmx:100789928 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g00556 1 7117321 7119173 Pte1g00556 1 7117321 7119173 RCT