Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00551 ATGGACATCATAGAAGAATCAAAGAATTGTTCTGACAAAGAAGGGGAGGAAGAAGAAGATATGATGATTAGAGAAGAGAGGTTCTCACACCAAGATGCAGCAGCAATAAATTTCAACACTAATATAGACCTCATGGACTTATCACTTGGAACCAAGGAAATTGATGAAGCGGCAGCTTTATTTCATGGGGGTGGTTGTGCTAGCACTAGTGCTGTTGGTGCAAGCGGAAGTGGTAGCAGCAGTCTTGGAACTAATTACAACTATAGCATTAGCACAGATAACGAATCAATCGAGAAAGAGCACATGTTTGACAAGGTGGTGACTCCAAGTGACGTTGGCAAGCTTAACCGCTTAGTGATACCAAAGCAACATGCTGAAAAGTACTTTCCTCTCGATTCTTCAAGCAACGATAAAGGGCTGCTTTTGAATTTCGAAGATAGGAGTGGCAAGTCATGGAGGTTCAGGTACTCTTACTGGAATAGCAGTCAGAGTTATGTGATGACCAAAGGTTGGAGTCGTTTTGTGAAGGAGAAGAAGCTTGATGCTGGTGATATTGTGTCCTTTCAGCGGGGTCTTGGTGACGTGCATAAACATCGTTTGTTCATAGATTGGAGGAGAAGACCTGATCATGCTGCTGGTGGTTTTATGTCACCTCTCTTGATTTCAAATCATCCTCATTTGTCTCCATACTCAATCAGATGGAGTGGAAGGCTTTATTCACTGCCTCAGCCATTGTCGACGTCGCGGCAGCACCATGAACATATGCAGCAAATGAATTACAATTTCCACCCCTACTACCACCAACAGCAGCAACACCGTCATTATCATCATTATGATCCTCATGGTAGTGGACGTCGATTCAATGAGGTCAGTTCAGACTCTGGTTCACTCTATTGTTTCAGTTCACCTAGTCTTCAAACTCAAGCTGTACGACAGGATGGAGGAGAGGCTCCAATGGTGATTGATTCTGTTCCAATTGCTCACCATAATGGTAAGACTACTTCTAAGAAGCTTCGACTATTTGGGGTGAACATGGAGTGTTCTCCCTCAGCAGATGAAGAACCAAGATGTCACATATTGTCCTCAACTATAATACCTTCTCATGTGAATGTGACAATGACTACCAATTCTGTCCCACCTCATCTTCTTCCTTCCTCTTCTCACTTACCACTTCAGTTGAGGTCACCTCATGGTGGTACTACGGCAATTCCATCATCTTATAGCCAGGCAAGATTTCAGGAGAAAGGGGAAAGTTCTATGCCTTTTGATTTGGATCCTTCAATGAAGTATTTCCGGTGA 1299 0.4326 MDIIEESKNCSDKEGEEEEDMMIREERFSHQDAAAINFNTNIDLMDLSLGTKEIDEAAALFHGGGCASTSAVGASGSGSSSLGTNYNYSISTDNESIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNDKGLLLNFEDRSGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGDVHKHRLFIDWRRRPDHAAGGFMSPLLISNHPHLSPYSIRWSGRLYSLPQPLSTSRQHHEHMQQMNYNFHPYYHQQQQHRHYHHYDPHGSGRRFNEVSSDSGSLYCFSSPSLQTQAVRQDGGEAPMVIDSVPIAHHNGKTTSKKLRLFGVNMECSPSADEEPRCHILSSTIIPSHVNVTMTTNSVPPHLLPSSSHLPLQLRSPHGGTTAIPSSYSQARFQEKGESSMPFDLDPSMKYFR* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00551 432 ProSiteProfiles B3 DNA-binding domain profile. 103 208 IPR003340 GO:0003677
Pte1g00551 432 FunFam B3 domain-containing protein 96 214 - -
Pte1g00551 432 MobiDBLite consensus disorder prediction 1 20 - -
Pte1g00551 432 MobiDBLite consensus disorder prediction 385 404 - -
Pte1g00551 432 Gene3D - 96 213 IPR015300 -
Pte1g00551 432 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 89 354 IPR044800 GO:0003700
Pte1g00551 432 SMART B3_2 103 208 IPR003340 GO:0003677
Pte1g00551 432 Pfam B3 DNA binding domain 103 207 IPR003340 GO:0003677
Pte1g00551 432 CDD B3_DNA 101 190 IPR003340 GO:0003677
Pte1g00551 432 MobiDBLite consensus disorder prediction 412 432 - -
Pte1g00551 432 SUPERFAMILY DNA-binding pseudobarrel domain 100 209 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00551 Pte-Chr1 7047003 7049517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00551 95 351 RAV Transcription Factor Family AT2G46870 51.894 3.05e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pte1g00551 B3 1.1e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00551 K09287 - qsa:O6P43_018503 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g00551 1 7047003 7049517 Pte1g00551 1 7047003 7049517 RCT