Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00541 ATGATGAATTTAAGTTCACTATTGGAGTTGTTGGGGGTGACAAGCATTCATGCTGTGTTGGACATTTTGGGCGCTGGGTTCAGATTTCAGCCAACTGACCAAGAGATCATGAGTTTCTTGAACTACAAGATGGTCGGTGATGAGTTCAAGGTTGAGATGATCCCTCTCGTTGATGTCTGCAAGTTTGAGCCTTGGGATTTACCTGATGTGATTGCAGGTAGATCGAAATTGAATTCAATGCACGAACAGTGGTTTTGCTTTTGTACTCCTGATTATAAGTACAGAAACAGTAATAGGGTTAACCGAGCAACTGATGCTGGGTATTGGAAGCCAACTGGTCGGGATCGTCAAATTAAGGCAGAAGGTACCAAACGGGTTATTGGCAAAAAGAAAACCCTTGTTTTCTATGAAGGTCGTGTTCCTAATAGTGTCAAGACCAGCTGGATCATCCATGAGTATCACCCAAAGTCTGTGCAACCTGATCAGGATTTTGTTTTATGCCGCTTGATGAAGAAGGCTGAGAAAAAAAGAGTGAAGACCAATCAGTCTGATGATGATTTAGGAGATACAAATAGAAATATGGGTTGTGACTCCAAGTGTAAAACACCCATAGAGGTACATTTTATGATGCAAGAAAATCAAGAACCGTTATGTATGTTACCGAAGCAGACAAAGGGGAGTGGCTTATCTTGCAGTGCTCAGTTACCTAGCCACAATTCAGTATCTGATCTCGGTTTCAGTAATGTTGTGGGAGAAGAAAATCAATATCCATTACTTGAGTCATTGCACCTGCCAGAGGTCAGTGAGCTACTCTTCATTTTGCAGTCAACTGAGCACAATGAGCAAGGACTCTCAGTGTCTGATCATGGCAATGCTATGTTACAAGAATGCAAAAACTCATTATCTGGATCACTGTTTCTGCCAGATGACAGTCACCCACCTTCCATTGTGCAGTTCCAGGAGCAAAACGAGATTGGATTGTCTCTATGTGATCTTAGTCAGCCGTATGAGTCAGCTGAGGGAGAGGAGCAGGAACTTTCAGTGACAGATTACCCACCTTCTATTCTGCAGTTCCAGGAGCAAAACGAGATTGGATTGTCTCTATGTGATCTTAGACAGCCGTATGAGTCAGCTGAGGGAGAGGAGCAGGGACTTTCAGTGACAGATTGTGTTGGAAATGAAGGCAAGCTATCGGAGATAATTAGCAATGCTGACAGCTGGGAAGATGTTGTCAACTCATTGTTAGTTTTTGACGAAGTTTGTGAGTCAAGTGATGATTAG 1281 0.4278 MMNLSSLLELLGVTSIHAVLDILGAGFRFQPTDQEIMSFLNYKMVGDEFKVEMIPLVDVCKFEPWDLPDVIAGRSKLNSMHEQWFCFCTPDYKYRNSNRVNRATDAGYWKPTGRDRQIKAEGTKRVIGKKKTLVFYEGRVPNSVKTSWIIHEYHPKSVQPDQDFVLCRLMKKAEKKRVKTNQSDDDLGDTNRNMGCDSKCKTPIEVHFMMQENQEPLCMLPKQTKGSGLSCSAQLPSHNSVSDLGFSNVVGEENQYPLLESLHLPEVSELLFILQSTEHNEQGLSVSDHGNAMLQECKNSLSGSLFLPDDSHPPSIVQFQEQNEIGLSLCDLSQPYESAEGEEQELSVTDYPPSILQFQEQNEIGLSLCDLRQPYESAEGEEQGLSVTDCVGNEGKLSEIISNADSWEDVVNSLLVFDEVCESSDD* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00541 426 SUPERFAMILY NAC domain 18 172 IPR036093 GO:0003677|GO:0006355
Pte1g00541 426 Gene3D NAC domain 32 177 IPR036093 GO:0003677|GO:0006355
Pte1g00541 426 ProSiteProfiles NAC domain profile. 23 172 IPR003441 GO:0003677|GO:0006355
Pte1g00541 426 Pfam No apical meristem (NAM) protein 25 154 IPR003441 GO:0003677|GO:0006355
Pte1g00541 426 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 25 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00541 Pte-Chr1 6638906 6640796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00541 20 185 NAC Transcription Factor Family AT4G35580 47.399 3.99e-43 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte1g00541 NAM 3.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00541 - - adu:107473112 189.119