Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00539 ATGCATGGAAATGAATCCGAGGTTGAGCTGATCCCTGTAATTGGCTTATGTGAACATGAACCTCGAGAGATACCTACCCTACCAGAATTCTCTCAGATAAACCCTAAAGACCCAGAATGGTATTTCTTCAGTCCCATTGTACACAAGTATCGAGACAGCAAAATGGTAAAGAGGTTAACAAAAGCTGGTTATTGGAAACCTACCGGTCAAGATCGTGTTATAAAGGATGAAGAAGAAGATATCATTGGAAAAAAAAAGACTTTGGTTTTCTATGAAGGCCGTGTTCCTAATGGCACCAAGACCAATTGGGTATGTCATGAGTACCAGTTAGCTTCACCTCTTTCAGACAAGAACCCCTATGTCCTATGCCACTTGATGAAGAAAGTAGAGAAAGCTACAGCGGAGTCTAGTAATTCAAATCCCGAAAGAGGAGAGCTGAGTGACTCTATATCTTATGCCATGAACAATGATGGAGAACCAAGCAGCAACAGGTCTCCTGATTTTGCATACCCACCAACAGAATATTCTTTTTCAGAGGTAAATGACATCCCACAAGCAGAAAACTCACCAGATGATGACTACCTGGAGTTGATGAAAAATTTTACCCTTCCTAACACCACGCCAATGCTTTCTGAAACTCATGACCTGGGAGAATTTACACCCAACTTCCCAAATCAATCTTCAACTTGCTACTATAATGAACCCATTTCACCATATAGCCATGCACTTATGCCTCAATACTTTGAGGAGGCCCCTTTAAGTTATTATGGCGAAAATCAAATAGATTTCGCTCAACCGAATTCATATTCTTCTATTGGAGAATATGACTACACTAGTTTCTGA 843 0.4045 MHGNESEVELIPVIGLCEHEPREIPTLPEFSQINPKDPEWYFFSPIVHKYRDSKMVKRLTKAGYWKPTGQDRVIKDEEEDIIGKKKTLVFYEGRVPNGTKTNWVCHEYQLASPLSDKNPYVLCHLMKKVEKATAESSNSNPERGELSDSISYAMNNDGEPSSNRSPDFAYPPTEYSFSEVNDIPQAENSPDDDYLELMKNFTLPNTTPMLSETHDLGEFTPNFPNQSSTCYYNEPISPYSHALMPQYFEEAPLSYYGENQIDFAQPNSYSSIGEYDYTSF* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00539 280 Pfam No apical meristem (NAM) protein 3 110 IPR003441 GO:0003677|GO:0006355
Pte1g00539 280 MobiDBLite consensus disorder prediction 132 169 - -
Pte1g00539 280 ProSiteProfiles NAC domain profile. 1 128 IPR003441 GO:0003677|GO:0006355
Pte1g00539 280 SUPERFAMILY NAC domain 3 128 IPR036093 GO:0003677|GO:0006355
Pte1g00539 280 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 187 - -
Pte1g00539 280 MobiDBLite consensus disorder prediction 132 171 - -
Pte1g00539 280 Gene3D NAC domain 1 133 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00539 Pte-Chr1 6474008 6476408 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00539 1 196 NAC Transcription Factor Family AT3G49530 35.821 4.18e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte1g00539 NAM 1.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00539 - - pcin:129287580 144.05