Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00536 ATGGCGGAATATGGAAACATGGGATTTTTTATGGCTTCTGGATCGGAGAGGGCATATAAGAGAGAATATGTAAGGAGCAGGTTAGACTTCGATAGCTCTGAGACTGTAAGCTCGAAAAAGCCAATCGTTGAGGATACTTCCACATCTGAATCCTACAAAGAGCTCGACATATTTGATATCAATTTTAATTTAGATTCCTTGGGAGTGGACTTCTCCTTTTCTGAAATGTTAAGTGACTTTGATCTTCACACTGAAGATATTAATTTTACTGGACAGCTAACAACAAGTTCTACGAAAGGCACTGGTTCGGGCCATTGCTTCATCTACATCAGAGATCGTATAGAATTTGGAGAACTAGAAGATCCTGAAGTTCTGAAATGGCGATCAGGCCCCCCAAAATTTGAGGATCTTTTATTTCAGTGGAACCTATGCAACTGTTTGAGTGTGGAAAACATTTGTAAGGTCATCCAAGCTAAGTCAGATAAGCTACATGAAGTTTTATCTACTGGAGATTGTTATGCAAACGAAATGCAGGTTGCGATTCAAATGCTCCAGCACGTCGAAGGAATTGAAGCAGGCAGCATCTTCTGGATCAAGTGTTTGAAGTATCTGCCTGGGTTCTTGGAAGACCCTGTAGTCACACTCTGTGGTCATCGTTACTGCTGGCCTTGCATCTTTAAGTGGCTTGATCACTTCCATGGTAGCTCCAATGAACACCAAGAATGTCAACCACCAAAATGCCCTGTCTATAAAGCAGAGGTAGTGCCCCTCTGTAGTTGTGGTCAAACAATCAATTCTTCCAAAGACAAGGGTCATCTGATTTCAAGAAGATGTCAAGGTCCAGTATGTAGATTAGACACACAGAGATCAACTCATCCTAGCACAAGTCGTCAACCAGTTCCACAAGTTCATGATCATTATTATCCTTATGCATCTGTACCGTTTAACTCAGGCTTGATTTCAATATTTCTCAGGCTCGAATCAATGACAGTTTCAATGGAATGTTGCTTTCTCCAAGTACAAAATGATACTTTCCACTTCAGTGAGAGAATAACCCACAACAAACCGAATGAACACCTGGAAAAAATTGCAGACCAACCAGTTGCACTATGA 1113 0.4106 MAEYGNMGFFMASGSERAYKREYVRSRLDFDSSETVSSKKPIVEDTSTSESYKELDIFDINFNLDSLGVDFSFSEMLSDFDLHTEDINFTGQLTTSSTKGTGSGHCFIYIRDRIEFGELEDPEVLKWRSGPPKFEDLLFQWNLCNCLSVENICKVIQAKSDKLHEVLSTGDCYANEMQVAIQMLQHVEGIEAGSIFWIKCLKYLPGFLEDPVVTLCGHRYCWPCIFKWLDHFHGSSNEHQECQPPKCPVYKAEVVPLCSCGQTINSSKDKGHLISRRCQGPVCRLDTQRSTHPSTSRQPVPQVHDHYYPYASVPFNSGLISIFLRLESMTVSMECCFLQVQNDTFHFSERITHNKPNEHLEKIADQPVAL* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00536 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 268 IPR013083 -
Pte1g00536 370 PANTHER MYOSIN-M HEAVY PROTEIN 15 100 - -
Pte1g00536 370 Pfam Zinc finger, C3HC4 type (RING finger) 208 242 IPR018957 GO:0046872
Pte1g00536 370 SUPERFAMILY RING/U-box 207 230 - -
Pte1g00536 370 ProSitePatterns Zinc finger RING-type signature. 216 225 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00536 Pte-Chr1 6357496 6369760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00536 208 282 C3H Transcription Factor Family AT4G28270 42.529 9.28e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00536 K10666 - csin:114262754 100.138