Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00534 ATGCAGCTGCTTGGCAACCATGCCAACTTTGGTTTGTTGCTGTGCTTTTGTATGAGCTTGTCATTGAAGTTCATGGTCGTGTACGGTGAAGGGCACTTTCAGCATCCTGTTTCTGACCCACATTGGCATCCGGGCACTGCTACTTGGTATGGCAACCCTGAAGGGGATGGTAGCAATGGTGGAGCATGTGGATATGGGTCATTAGTTGACGTGAAGCCATTGAAGGCACGAGTGGGTGCAATTGGGCCAGTTCTGTTCAAGAATGGTGAAGGATGTGGGGAATGCTACAAGGTCAAGTGCTTGGACGAGAGGATATGCTCAAATAGAGCTGTCACTGTTATAATCACCGACGAGTGCCCTGGCTGTCCTTCAGACAGAACCCACTTCGACCTCAGCGGTGCTGCTTTCGGGCGCATGGCCGTCGCCGGTGAGGGTGGTCAGCTCAGAGACAGGGGAGAAATCCCCGTCATGTACCGAAGAACTCCTTGTAAATATCCTGGGAGAAACGTGGCATTCCATGTCAACGAAGGTTCAACAGCATTCTGGCTCTCTCTACTGGTTGAGTTTGAGGATGATGATGGGGATATTGGGTCAATGCACATCCAAGAGACAGGGTCCAGTGAGTGGCTAGCAATGAATCATTTATGGGGTGCCAATTGGTACATCGTCGGCGGACCTTTGAGGGGACCCTTTTCAGTGAAGTTAACAACGCTATCGACAGGAAAAGCTCTGTCTGCTAGAGATGTCATCCCCAGCAATTGGGTTCCAAAAGCCACTTACACCTCTGGACTCAATTTCTTCCCTTAG 807 0.5043 MQLLGNHANFGLLLCFCMSLSLKFMVVYGEGHFQHPVSDPHWHPGTATWYGNPEGDGSNGGACGYGSLVDVKPLKARVGAIGPVLFKNGEGCGECYKVKCLDERICSNRAVTVIITDECPGCPSDRTHFDLSGAAFGRMAVAGEGGQLRDRGEIPVMYRRTPCKYPGRNVAFHVNEGSTAFWLSLLVEFEDDDGDIGSMHIQETGSSEWLAMNHLWGANWYIVGGPLRGPFSVKLTTLSTGKALSARDVIPSNWVPKATYTSGLNFFP* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00534 268 SUPERFAMILY Barwin-like endoglucanases 37 167 IPR036908 -
Pte1g00534 268 PANTHER EXPANSIN-B3 22 266 - -
Pte1g00534 268 Pfam Lytic transglycolase 84 158 IPR009009 -
Pte1g00534 268 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Pte1g00534 268 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Pte1g00534 268 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Pte1g00534 268 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576
Pte1g00534 268 PRINTS Expansin/Lol pI family signature 209 223 IPR007118 GO:0005576
Pte1g00534 268 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Pte1g00534 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 168 IPR007112 -
Pte1g00534 268 Gene3D - 30 164 IPR036908 -
Pte1g00534 268 PRINTS Major pollen allergen Lol pI signature 238 255 IPR005795 GO:0005576|GO:0019953
Pte1g00534 268 PRINTS Major pollen allergen Lol pI signature 118 133 IPR005795 GO:0005576|GO:0019953
Pte1g00534 268 PRINTS Major pollen allergen Lol pI signature 140 155 IPR005795 GO:0005576|GO:0019953
Pte1g00534 268 PRINTS Major pollen allergen Lol pI signature 80 91 IPR005795 GO:0005576|GO:0019953
Pte1g00534 268 PRINTS Major pollen allergen Lol pI signature 172 187 IPR005795 GO:0005576|GO:0019953
Pte1g00534 268 PRINTS Major pollen allergen Lol pI signature 188 203 IPR005795 GO:0005576|GO:0019953
Pte1g00534 268 FunFam Beta-expansin 3 165 267 - -
Pte1g00534 268 FunFam Expansin B3 29 164 - -
Pte1g00534 268 Gene3D - 165 267 IPR036749 -
Pte1g00534 268 SMART dpbb_1 78 158 IPR007112 -
Pte1g00534 268 SUPERFAMILY PHL pollen allergen 168 262 IPR036749 -
Pte1g00534 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 262 IPR007117 -
Pte1g00534 268 Pfam Expansin C-terminal domain 170 251 IPR007117 -
Pte1g00534 268 CDD DPBB_EXPB_N 42 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00534 Pte-Chr1 6346257 6348078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00534 37 203 Expansin Gene Family AT4G28250 74.251 4.58e-91 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00534 K20628 - qsa:O6P43_000705 455.677