Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte1g00517 | ATGGATGACTCAACTACGTCAAATGACAGTCCAGCTATTGAATTAACTGGCAAGGTCACGGTGGCTGCTGTGATTGTACTCTTCTTGGTGGTTGTGTTTGTCGCTGCCCTGCATCTTTATGCCAAATGGTTCTGGTGGCAGACTGAAGAAGCCACCAACTATGAAGGTCGTAGTCGGCACCATAGGCAGAGGTTTATCTTCGCCCCAGGTCAAGACACTACTATCTCCACCACTGAAGGCAAAGGGCTTGACCCTGCAATCCTCAAGTCCATACCTGTAATGCTATACAATCCAGCTGAGTTCAAAGATGACTTGGAATGTGCTGTTTGCCTCTCTGAGCTTGAACAAGGCGAAAAAGCCAGGCTGCTACCTAAATGCCACCATGGGTTTCATGTTGATTGCATAGACATGTGGTTTCAATCAAATTCTACATGCCCTCTTTGCAGAAACCCTGTTTCTTCTGCAGCATCTGATGATGTGGCACAAATTCAGATGCCAACAGAGAATTTGGCTTCTGACTCTCCAATTTTCCCTACAAACGTGTTGGTTTGGGGAAACCAAATGCAGGTGACTTCTGTGGGTGCTTGTTTAGAAGAGGATTCTTCTTCTCAACCCACAAGCTCATCTTCTTCTGCTTCAACTTCACTGCCTGCCGCGGGTAATAGTAATAGGCCTCATGGGGTGCTGGTGATTGATATACAAAATGAGATGATCAATCCATCATCTTCATCAACTTCTACTGCTGCTAGGTTTGCAGATGATGAGCTTAAATCATCGATGGTTGCTAGACTGAGGTCATTGAAGAGACTGTTGAGCAGAGAGAAGAGATCAAATCCTTGCAGTCCTAGTTCTAGGGATGCAGAACAAGTAGGAAGAGGCCAGATCTAA | 888 | 0.4561 | MDDSTTSNDSPAIELTGKVTVAAVIVLFLVVVFVAALHLYAKWFWWQTEEATNYEGRSRHHRQRFIFAPGQDTTISTTEGKGLDPAILKSIPVMLYNPAEFKDDLECAVCLSELEQGEKARLLPKCHHGFHVDCIDMWFQSNSTCPLCRNPVSSAASDDVAQIQMPTENLASDSPIFPTNVLVWGNQMQVTSVGACLEEDSSSQPTSSSSSASTSLPAAGNSNRPHGVLVIDIQNEMINPSSSSTSTAARFADDELKSSMVARLRSLKRLLSREKRSNPCSPSSRDAEQVGRGQI* | 296 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte1g00517 | 295 | ProSiteProfiles | Zinc finger RING-type profile. | 107 | 149 | IPR001841 | - | |
Pte1g00517 | 295 | Pfam | Ring finger domain | 106 | 149 | IPR001841 | - | |
Pte1g00517 | 295 | CDD | RING-H2_EL5-like | 106 | 149 | - | - | |
Pte1g00517 | 295 | PANTHER | RING-H2 FINGER PROTEIN ATL16 | 21 | 214 | IPR044600 | GO:0016567|GO:0016740 | |
Pte1g00517 | 295 | FunFam | RING-H2 finger protein ATL3 | 74 | 154 | - | - | |
Pte1g00517 | 295 | SUPERFAMILY | RING/U-box | 87 | 154 | - | - | |
Pte1g00517 | 295 | MobiDBLite | consensus disorder prediction | 267 | 295 | - | - | |
Pte1g00517 | 295 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 86 | 159 | IPR013083 | - | |
Pte1g00517 | 295 | SMART | ring_2 | 107 | 148 | IPR001841 | - | |
Pte1g00517 | 295 | MobiDBLite | consensus disorder prediction | 195 | 225 | - | - | |
Pte1g00517 | 295 | MobiDBLite | consensus disorder prediction | 195 | 221 | - | - | |
Pte1g00517 | 295 | MobiDBLite | consensus disorder prediction | 267 | 281 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte1g00517 | Pte-Chr1 | 6004724 | 6006343 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte1g00517 | 1 | 278 | C3H Transcription Factor Family | AT1G53820 | 39.688 | 6.76e-62 | 196 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte1g00517 | - | - | qsa:O6P43_027473 | 317.775 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pte1g00517 | 1 | 6004724 | 6006343 | Pte1g00517 | 1 | 6004724 | 6006343 | RCT |