Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00517 ATGGATGACTCAACTACGTCAAATGACAGTCCAGCTATTGAATTAACTGGCAAGGTCACGGTGGCTGCTGTGATTGTACTCTTCTTGGTGGTTGTGTTTGTCGCTGCCCTGCATCTTTATGCCAAATGGTTCTGGTGGCAGACTGAAGAAGCCACCAACTATGAAGGTCGTAGTCGGCACCATAGGCAGAGGTTTATCTTCGCCCCAGGTCAAGACACTACTATCTCCACCACTGAAGGCAAAGGGCTTGACCCTGCAATCCTCAAGTCCATACCTGTAATGCTATACAATCCAGCTGAGTTCAAAGATGACTTGGAATGTGCTGTTTGCCTCTCTGAGCTTGAACAAGGCGAAAAAGCCAGGCTGCTACCTAAATGCCACCATGGGTTTCATGTTGATTGCATAGACATGTGGTTTCAATCAAATTCTACATGCCCTCTTTGCAGAAACCCTGTTTCTTCTGCAGCATCTGATGATGTGGCACAAATTCAGATGCCAACAGAGAATTTGGCTTCTGACTCTCCAATTTTCCCTACAAACGTGTTGGTTTGGGGAAACCAAATGCAGGTGACTTCTGTGGGTGCTTGTTTAGAAGAGGATTCTTCTTCTCAACCCACAAGCTCATCTTCTTCTGCTTCAACTTCACTGCCTGCCGCGGGTAATAGTAATAGGCCTCATGGGGTGCTGGTGATTGATATACAAAATGAGATGATCAATCCATCATCTTCATCAACTTCTACTGCTGCTAGGTTTGCAGATGATGAGCTTAAATCATCGATGGTTGCTAGACTGAGGTCATTGAAGAGACTGTTGAGCAGAGAGAAGAGATCAAATCCTTGCAGTCCTAGTTCTAGGGATGCAGAACAAGTAGGAAGAGGCCAGATCTAA 888 0.4561 MDDSTTSNDSPAIELTGKVTVAAVIVLFLVVVFVAALHLYAKWFWWQTEEATNYEGRSRHHRQRFIFAPGQDTTISTTEGKGLDPAILKSIPVMLYNPAEFKDDLECAVCLSELEQGEKARLLPKCHHGFHVDCIDMWFQSNSTCPLCRNPVSSAASDDVAQIQMPTENLASDSPIFPTNVLVWGNQMQVTSVGACLEEDSSSQPTSSSSSASTSLPAAGNSNRPHGVLVIDIQNEMINPSSSSTSTAARFADDELKSSMVARLRSLKRLLSREKRSNPCSPSSRDAEQVGRGQI* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00517 295 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Pte1g00517 295 Pfam Ring finger domain 106 149 IPR001841 -
Pte1g00517 295 CDD RING-H2_EL5-like 106 149 - -
Pte1g00517 295 PANTHER RING-H2 FINGER PROTEIN ATL16 21 214 IPR044600 GO:0016567|GO:0016740
Pte1g00517 295 FunFam RING-H2 finger protein ATL3 74 154 - -
Pte1g00517 295 SUPERFAMILY RING/U-box 87 154 - -
Pte1g00517 295 MobiDBLite consensus disorder prediction 267 295 - -
Pte1g00517 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 159 IPR013083 -
Pte1g00517 295 SMART ring_2 107 148 IPR001841 -
Pte1g00517 295 MobiDBLite consensus disorder prediction 195 225 - -
Pte1g00517 295 MobiDBLite consensus disorder prediction 195 221 - -
Pte1g00517 295 MobiDBLite consensus disorder prediction 267 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00517 Pte-Chr1 6004724 6006343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00517 1 278 C3H Transcription Factor Family AT1G53820 39.688 6.76e-62 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00517 - - qsa:O6P43_027473 317.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g00517 1 6004724 6006343 Pte1g00517 1 6004724 6006343 RCT