Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00505 ATGTGTGGAGGTGCTATCATCTCCGACTTCATTCCGGCTGGGATTAGAGCTAGTCGGCGGTTGACTGCTGATTACCTATGGCCTGAATTGAAGAAATCCTGTTCAGGAAATGGCTATTCCAAGCCACTGAAGTCAGACTTCATTGGTGTGGATGAGGATTTTGAAGCTGGCTTTAGAAATTTCAAGGATGACTCTGAGATTGATGAGAAGGAGCATGATGTGGTGGGGGATTTCAAGTCCTGTGCTTTCCCAGCTTCCAAGCCTAAAGTTTCAAAGGGCTCTACTGTTGTGAAAATTACTGAACCCAATGAACAAGCTGAGAAAACTTTAAAGAGGAAGAGAAAGAATCAGTACAGGGGAATTAGGCAGCGTCCATGGGGCAAGTGGGCAGCTGAGATCCGTGATCCAAGAAAGGGAGTTCGTGTCTGGCTTGGGACTTTCAATACCGCTGAAGATGCTGCGAGAGCTTATGATGCTGAAGCTCGACGAATTCGTGGAAAGAAAGCCAAGGTGAATTTCCCTGAAGAGAATCCATCCGGTTACTCAAAGCGTTCTGCCAACAAAATGACGGATAAGCTTTTTCCCGAGGCTAATGTGAACTCTGCTCAAACATACCAAAATCTATATGCCAATAATTTGGATAATGACTACAATAGCATGTGCCTGATGGAAGAGAAACCACTGATGGTTGATTTACCAAAATCTTTCCCTGGAGCCAGCAGTGATGGGATGACATCCTTCACTTCCTCTGATAGTGTTCTGCCCTATTTTAGTTCTGATCAAGGTAGTAACTCATTCGGTTGTTCAGACTTTTACTGGAGTGAACAAGGCTCCATGACTCCGGAAATTTCATCCGTGCTTTGCCCTCCACTGGACAATGAAGTCCAGTATGTGGAAGATGCAAATCCAAGTCAGAAGCTTAAGTCAATCCCTGAGTTTGCCCCTTCTCAAGAAGAAAATTCTGGCAGCCCACTCTCTGATGAACTTTTAGGTATGGAGTCCCAGATGCTTGAAGAAAACTGGGATGCTTCGCTGGATGCCTTCTTGAATGGAGGCGCGGCTCAAGGTTCTGGATTGATGGACTTTTGGAGCTTTGATGACAACACTCCTTCCCTGATGGGAGGAGTTCTCTGA 1134 0.4559 MCGGAIISDFIPAGIRASRRLTADYLWPELKKSCSGNGYSKPLKSDFIGVDEDFEAGFRNFKDDSEIDEKEHDVVGDFKSCAFPASKPKVSKGSTVVKITEPNEQAEKTLKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEDAARAYDAEARRIRGKKAKVNFPEENPSGYSKRSANKMTDKLFPEANVNSAQTYQNLYANNLDNDYNSMCLMEEKPLMVDLPKSFPGASSDGMTSFTSSDSVLPYFSSDQGSNSFGCSDFYWSEQGSMTPEISSVLCPPLDNEVQYVEDANPSQKLKSIPEFAPSQEENSGSPLSDELLGMESQMLEENWDASLDAFLNGGAAQGSGLMDFWSFDDNTPSLMGGVL* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00505 377 PANTHER DNA-BINDING DOMAIN 92 226 IPR044808 GO:0003700|GO:0009873
Pte1g00505 377 FunFam Ethylene-responsive transcription factor 2 116 175 - -
Pte1g00505 377 Pfam AP2 domain 117 166 IPR001471 GO:0003700|GO:0006355
Pte1g00505 377 SUPERFAMILY DNA-binding domain 117 175 IPR016177 GO:0003677
Pte1g00505 377 SMART rav1_2 117 180 IPR001471 GO:0003700|GO:0006355
Pte1g00505 377 Gene3D AP2/ERF domain 116 175 IPR036955 GO:0003700|GO:0006355
Pte1g00505 377 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Pte1g00505 377 PRINTS Ethylene responsive element binding protein signature 140 156 IPR001471 GO:0003700|GO:0006355
Pte1g00505 377 CDD AP2 117 175 IPR001471 GO:0003700|GO:0006355
Pte1g00505 377 ProSiteProfiles AP2/ERF domain profile. 117 174 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00505 Pte-Chr1 5882773 5886231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00505 1 378 AP2-EREBP Transcription Factor Family AT1G53910 45.707 1.18e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pte1g00505 AP2 9.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00505 K09286 - cave:132186622 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g00505 1 5882773 5886231 Pte1g00505 1 5882773 5886231 RCT