Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00504 ATGGCCGCCGTGCAAGCTGCTCAACCGCGCCAGCTCTCTCAGAAGGAGGCTGACATCCAGATGATGTTGGCCGCGGAATGCCACCTCGGTACCAAGAACTGTGATTTCCAAATGGAGCGTTACATCTTCAAGCGCCGTCAAGATGGAATATATGTTATTAATCTTGGAAAGACATGGGAGAAGCTGCAGCTTGCTGCTAGGGTGATTGTTGCAATTGAGAATCCCCAAGATATTATTGTTCAGTCTGCAAGGCCTTATGGTCAGAGGGCAGTTCTGAAATTCGCTCAGTATACAGGTGCCCATGCCATTGCCGGGAGGCACACCCCTGGTACATTCACAAATCAGATGCAGACATCTTTCAGTGAGCCACGACTCCTGATCTTAACTGACCCAAGAACTGATCACCAACCCATCAAGGAAGGTGCACTTGGAAACATTCCCACAATTGCTTTCTGTGACACTGATTCTCCCATGCGTTATGTTGACATTGGAATTCCTTCCAACAACAAGGGTAGGCACAGTATTGGATGTCTTTTTTGGTTGTTAGCAAGAATGGTTCTTCAGATGCGGGGCATTATTCGTGCTGGGCAAAAGTGGGATGTGATGGTCGACCTGTTTTTCTATAGAGATCCTGAAGAGGCCAAGAAGCAAGAGGAAGAGGAAGCAGCTGTCATTACAGATTATGCTGTGGACTACGGTGCTGCTGCAGTTATTGATGCCCAGTGGGGAACTCCAACTGATTCCCAATGGCCAGACCCTGCACAACAAATTGCAGTTGCACCTCCTGCTACTGGCTGGATCCCAGAACAACCAGCCGTGACAGGAGACTGGGAAACTGTTGCACCTCCTCCACAAGTTCCCGTAGTACCTGGTGCAGCTGAACCTGTCAGTACTACTTGGGAATAA 906 0.4901 MAAVQAAQPRQLSQKEADIQMMLAAECHLGTKNCDFQMERYIFKRRQDGIYVINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPSNNKGRHSIGCLFWLLARMVLQMRGIIRAGQKWDVMVDLFFYRDPEEAKKQEEEEAAVITDYAVDYGAAAVIDAQWGTPTDSQWPDPAQQIAVAPPATGWIPEQPAVTGDWETVAPPPQVPVVPGAAEPVSTTWE* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00504 301 MobiDBLite consensus disorder prediction 280 301 - -
Pte1g00504 301 Gene3D - 18 224 - -
Pte1g00504 301 PRINTS Ribosomal protein S2 signature 49 58 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte1g00504 301 PRINTS Ribosomal protein S2 signature 98 115 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte1g00504 301 PRINTS Ribosomal protein S2 signature 161 175 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte1g00504 301 PRINTS Ribosomal protein S2 signature 123 140 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte1g00504 301 PRINTS Ribosomal protein S2 signature 19 37 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte1g00504 301 PRINTS Ribosomal protein S2 signature 140 151 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte1g00504 301 FunFam 40S ribosomal protein SA 18 224 - -
Pte1g00504 301 CDD RPS2 22 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte1g00504 301 PANTHER 40S RIBOSOMAL PROTEIN SA 7 286 IPR005707 GO:0003735|GO:0006412|GO:0015935
Pte1g00504 301 Hamap 40S ribosomal protein SA [rps-0]. 6 280 IPR027498 GO:0003735|GO:0006412|GO:0015935
Pte1g00504 301 NCBIfam 30S ribosomal protein S2 14 209 IPR005707 GO:0003735|GO:0006412|GO:0015935
Pte1g00504 301 ProSitePatterns Ribosomal protein S2 signature 2. 123 147 IPR018130 GO:0003735|GO:0005840|GO:0006412
Pte1g00504 301 Pfam Ribosomal protein S2 22 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte1g00504 301 Pfam Ribosomal protein S2 120 186 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pte1g00504 301 SUPERFAMILY Ribosomal protein S2 14 204 IPR023591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00504 Pte-Chr1 5874424 5878142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00504 6 283 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 73.214 5.04e-150 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00504 K02998 - jre:109005425 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g00504 1 5874424 5878142 Pte1g00504 1 5874424 5878142 RCT