Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00487 ATGGAAGAGCAGATGAAGGGGAATACAATATCGGAAGTGGTACTGAAGAAGAGGAAATCCAATGAGGCTCGAGCGCTGATAAAGAAGGACCAATTTGAGCGCAGGACCAAGAAAAAAGACAAATGCAGAGTTTTTATCAAAAGGCCTCAGGATTATATCATAGAACATCGCAACAAGGAATTAGATCTCATTCGGATGAGACGGAGGTCACAGAGAAAACTGCCAACACTAAAATCAAAGTTGCTATTAGTCGTCCGCATCCAGGGAAAAAATGACATGCATCAAAAGACCAGGAAGATCTTAGGTAGCTTGAGGTTGAGGAGGAACTTTGATGCTGTCTTTGTGAAGGCAAATGAATCCACACTGGCAAAGCTTCAGATGGTGGAGCCATATGTAACATATGGGTATCCTAATATCAAGAATGTGAGGGACCTTATTTTCAAGAGGGGTTATGCAAGAGTAGACAAGCAAAAGGTTCCTTTGACAGACAATAACCTTATTGAACGGGAACTAGGGAAGTATGGTATCATTTGTATAGAAGATATGGTGCGTGAGATCACTGATGTCGGTGCCCATTTCAAGGAGGTAACCAGCTTTTTATGTCCCTTTGCACTCAGCAAGCCTCAAAGTGGATTGCAAGGGTCAAAAACCTTGTACAAGCAAGGTGGTGACACTGGCAATCGCGAGGACAATATCAACGATTTGATTGACAAGATGAACTAG 723 0.4246 MEEQMKGNTISEVVLKKRKSNEARALIKKDQFERRTKKKDKCRVFIKRPQDYIIEHRNKELDLIRMRRRSQRKLPTLKSKLLLVVRIQGKNDMHQKTRKILGSLRLRRNFDAVFVKANESTLAKLQMVEPYVTYGYPNIKNVRDLIFKRGYARVDKQKVPLTDNNLIERELGKYGIICIEDMVREITDVGAHFKEVTSFLCPFALSKPQSGLQGSKTLYKQGGDTGNREDNINDLIDKMN* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00487 240 Pfam Ribosomal protein L30p/L7e 82 132 IPR016082 -
Pte1g00487 240 NCBIfam 60S ribosomal protein uL30 12 240 IPR005998 GO:0000463|GO:0003735|GO:0022625
Pte1g00487 240 Pfam Ribosomal L30 N-terminal domain 11 72 IPR012988 -
Pte1g00487 240 CDD Ribosomal_L7_archeal_euk 81 240 IPR035808 -
Pte1g00487 240 FunFam 60S ribosomal protein L7 81 185 - -
Pte1g00487 240 Gene3D - 81 240 IPR036919 -
Pte1g00487 240 PANTHER 60S RIBOSOMAL PROTEIN L7 8 240 IPR039699 -
Pte1g00487 240 SUPERFAMILY Ribosomal protein L30p/L7e 81 240 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00487 Pte-Chr1 5572131 5575365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00487 2 241 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 52.439 3.29e-79 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00487 K02937 - qsa:O6P43_017954 336.265