Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00484 ATGTGGGATCAGAAAACAGGACGTTCCAGAGGATTTGGTTTTGTTTCCTTCCGCAGCCAGCAGGATGCTCAAAGTGCCATTAATGATTTGACTGGTAAGTGGCTTGGCAGTAGGCAAATCCGCTGTAACTGGGCCACAAAAGGAGCTGGTGTAAATGATGATAGACAAAGCTCAGACTCAAAAAGTGTGGTTGAGCTAACAAATGGATCATCTGAAGAGAACAGAGAAGCAACTAACAGTGAGACTCCTGAGAACAATCCTCAGTACACGACAGTTTATGTGGGCAATCTTGCTCCAGAGGTCACCCAGCTTGATCTCCACCGCTACTTCCATTCTCTTTGTGCTGGAGCAATTGAAGAGGTCCGTATCCAACGAGATAAAGGATTTGGTTTTGTGAGATACAGTACTCATGCAGAAGCTGCTTTAGCCATTCAGCTGGGCAATGCTCAGCCCTACCTCTTTGGCAAACAAATTAAGTGCTCTTGGGGGAGCAAGCCAACTCCACCTGGAACTGCTTCAAATCCTCTTCCCCCTCCTGCAGCTGCACCTCTGCAAGGCCTCTCTGCAGCAGACCTATTTTCTGGATACGAGCGACAGCTGGCAATGAGCAAGATGGGAGGTGTCCATTCCCTGATGCAGGCGCAGGGTCAGCTTCCCCTTAAGCAGGCAGCAATTGGAGGGAGCCAAGCAATATATGATGGCGGTTTCCAGAATGTTGCTGCTGCCCAGCAACTGATGTACTACCAGTAA 750 0.4893 MWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGVNDDRQSSDSKSVVELTNGSSEENREATNSETPENNPQYTTVYVGNLAPEVTQLDLHRYFHSLCAGAIEEVRIQRDKGFGFVRYSTHAEAALAIQLGNAQPYLFGKQIKCSWGSKPTPPGTASNPLPPPAAAPLQGLSAADLFSGYERQLAMSKMGGVHSLMQAQGQLPLKQAAIGGSQAIYDGGFQNVAAAQQLMYYQ* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00484 249 MobiDBLite consensus disorder prediction 50 89 - -
Pte1g00484 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 47 IPR000504 GO:0003723
Pte1g00484 249 SUPERFAMILY RNA-binding domain, RBD 1 56 IPR035979 GO:0003676
Pte1g00484 249 Gene3D - 67 169 IPR012677 -
Pte1g00484 249 Gene3D - 1 62 IPR012677 -
Pte1g00484 249 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 1 168 - -
Pte1g00484 249 SMART rrm1_1 91 161 IPR000504 GO:0003723
Pte1g00484 249 FunFam Oligouridylate-binding protein 1C 67 169 - -
Pte1g00484 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 41 IPR000504 GO:0003723
Pte1g00484 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 146 IPR000504 GO:0003723
Pte1g00484 249 SUPERFAMILY RNA-binding domain, RBD 82 172 IPR035979 GO:0003676
Pte1g00484 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 165 IPR000504 GO:0003723
Pte1g00484 249 MobiDBLite consensus disorder prediction 48 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00484 Pte-Chr1 5552125 5554582 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00484 6 148 Eukaryotic Initiation Factors Gene Family AT1G71770 29.054 9.78e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00484 K13201 - mof:131163750 419.468